Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,724,282 – 3,724,375 |
Length | 93 |
Max. P | 0.761861 |
Location | 3,724,282 – 3,724,375 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.33 |
Mean single sequence MFE | -24.01 |
Consensus MFE | -15.74 |
Energy contribution | -15.30 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.42 |
Structure conservation index | 0.66 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3724282 93 - 23771897 AUGCAAUUGCCGCCUGCGAGGAGGGAUAUAUUCCGAUCCUUCGUCUUGGGUCCACCUUCUACCUUCAUACCUCCCUUCCUCGCUCCCUUCCAU ..((....)).....(((((((((((..(((...(((((........)))))..............)))..)))).))))))).......... ( -23.33) >DroSec_CAF1 119197 82 - 1 AUGCAAUUGCCGCCUGUGAGGAGGGAUAUAUUCCGAUCCUUCGGCUUGGGUCCAA--GCUACCAUCAUACCUACCUCCC---------UCCAU ..((....)).........(((((((.......(((....)))(((((....)))--))................))))---------))).. ( -23.60) >DroSim_CAF1 115135 82 - 1 AUGCAAUUGCCGCCUGCGAGGAGGGAUAUAUUCCGAUCCUUCGGCUUGGGUCCAA--GCUACCUCCAGCCCUACCUCCC---------UCCAU ......((((.....))))(((((((.......(((....)))(((((....)))--))................))))---------))).. ( -25.10) >consensus AUGCAAUUGCCGCCUGCGAGGAGGGAUAUAUUCCGAUCCUUCGGCUUGGGUCCAA__GCUACCUUCAUACCUACCUCCC_________UCCAU ..(((.........)))(((((((((.....)))(((((........)))))..................)).))))................ (-15.74 = -15.30 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:56 2006