| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,713,804 – 3,713,907 |
| Length | 103 |
| Max. P | 0.920121 |
| Location | 3,713,804 – 3,713,894 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.91 |
| Mean single sequence MFE | -17.89 |
| Consensus MFE | -12.74 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.13 |
| Mean z-score | -3.19 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3713804 90 + 23771897 UCUU----CACCUCACAAAUACAAAAUCGACUUGUCACUUGUCAAAGUGACACCAUUUAAAG-UUAACUCAUUAAUCAAGCACCGCUGCUUGAAA ....----....................((((((((((((....))))))))........))-))..........(((((((....))))))).. ( -18.40) >DroSec_CAF1 108842 90 + 1 UCCU----CACCUCACAAAUACAAAAUCAACUUGUCACUUGUCAAAGUGACACCAUUUAAAG-UUAACUCAUUAAUCAAGCACAGCUGCUUGAAC ....----........................((((((((....))))))))..........-............(((((((....))))))).. ( -18.20) >DroSim_CAF1 104697 90 + 1 UUCU----CACCUCACAAAUACAAAAUCAACUUGUCACUUGUCAAAGUGACACCAUUUAAAG-GUAACUCAUUAAUCAAGCACAGCUGCUUGAAC ....----...........(((..........((((((((....))))))))..........-))).........(((((((....))))))).. ( -19.25) >DroEre_CAF1 104031 90 + 1 GCGU----CAGCACCCAAAUACAAAAUCAACUUGUAGCUUGUCAAAGUGACACCUUUUAAAG-UUGAUUCAUUAAUCAAGUACAGCUGCUUGAAC ((..----..))............(((((((((..((..((((.....))))..))...)))-))))))......(((((((....))))))).. ( -19.80) >DroYak_CAF1 92138 90 + 1 UCUC----CAGCACCCAAGUGCCAAAUCAACUUGUAGCUUGUCAAAGUGACACCUUUUAAAG-UUAAUUCGUUAAUCAAGCACAGCUGCUUGAAC ....----..((((....))))......(((((..((..((((.....))))..))...)))-))..........(((((((....))))))).. ( -18.30) >DroAna_CAF1 109054 93 + 1 UUCUCACCCACUGUACAAAUAGUCCAUCAACUUGUCAGUUGUCAAAGCGACAACUUGUAAAAUUUGACUCAUUAAUCAAGAACAGCUGCU--AAC ........((((((.................(((..(((((((.....)))))))..)))..(((((........))))).)))).))..--... ( -13.40) >consensus UCCU____CACCUCACAAAUACAAAAUCAACUUGUCACUUGUCAAAGUGACACCAUUUAAAG_UUAACUCAUUAAUCAAGCACAGCUGCUUGAAC ................................((((((((....)))))))).......................(((((((....))))))).. (-12.74 = -13.63 + 0.89)
| Location | 3,713,815 – 3,713,907 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -13.14 |
| Energy contribution | -14.03 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3713815 92 + 23771897 CAAAUACAAAAUCGACUUGUCACUUGUCAAAGUGACACCAUUUAAAG-UUAACUCAUUAAUCAAGCACCGCUGCUUGAAACGAG---------------------------CCCUAAAAG ...........(((...((((((((....))))))))..........-............(((((((....)))))))..))).---------------------------......... ( -20.60) >DroSec_CAF1 108853 92 + 1 CAAAUACAAAAUCAACUUGUCACUUGUCAAAGUGACACCAUUUAAAG-UUAACUCAUUAAUCAAGCACAGCUGCUUGAACCGAA---------------------------CCCUAAGAG ...........((....((((((((....))))))))..........-............(((((((....)))))))...)).---------------------------......... ( -18.60) >DroSim_CAF1 104708 92 + 1 CAAAUACAAAAUCAACUUGUCACUUGUCAAAGUGACACCAUUUAAAG-GUAACUCAUUAAUCAAGCACAGCUGCUUGAACCGAA---------------------------CCCUAAGAG ...........((....((((((((....)))))))).........(-((..........(((((((....)))))))))))).---------------------------......... ( -19.50) >DroEre_CAF1 104042 92 + 1 CAAAUACAAAAUCAACUUGUAGCUUGUCAAAGUGACACCUUUUAAAG-UUGAUUCAUUAAUCAAGUACAGCUGCUUGAACCGAA---------------------------CCCUAAGAG .........(((((((((..((..((((.....))))..))...)))-))))))......(((((((....)))))))......---------------------------......... ( -18.10) >DroYak_CAF1 92149 92 + 1 CAAGUGCCAAAUCAACUUGUAGCUUGUCAAAGUGACACCUUUUAAAG-UUAAUUCGUUAAUCAAGCACAGCUGCUUGAACCGAA---------------------------CCCUAAGAC (((((.........)))))((((((...((((......))))..)))-))).((((....(((((((....)))))))..))))---------------------------......... ( -17.60) >DroAna_CAF1 109069 118 + 1 CAAAUAGUCCAUCAACUUGUCAGUUGUCAAAGCGACAACUUGUAAAAUUUGACUCAUUAAUCAAGAACAGCUGCU--AACCGAACGACCGGAAGUGAGAGACUCCGCAAACCCUUAAGAG .....((((..((((.(((..(((((((.....)))))))..)))...))))((((((.....((.....))...--..(((......))).)))))).))))................. ( -20.70) >consensus CAAAUACAAAAUCAACUUGUCACUUGUCAAAGUGACACCAUUUAAAG_UUAACUCAUUAAUCAAGCACAGCUGCUUGAACCGAA___________________________CCCUAAGAG ...........((....((((((((....)))))))).......................(((((((....)))))))...))..................................... (-13.14 = -14.03 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:55 2006