Locus 1281

Sequence ID 3L_DroMel_CAF1
Location 3,703,457 – 3,703,561
Length 104
Max. P 0.578007
window1999

overview

Window 9

Location 3,703,457 – 3,703,561
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -34.13
Consensus MFE -24.64
Energy contribution -23.73
Covariance contribution -0.91
Combinations/Pair 1.48
Mean z-score -1.09
Structure conservation index 0.72
SVM decision value 0.09
SVM RNA-class probability 0.578007
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3703457 104 - 23771897
GCUAGGAAACUAUGUACAAUGUGGUGCUUCGUGCCUCAGGGUACGCGUCCUGCGUCACUCAUACGCCGCAUGGACCGCUUAUAGUGUACCACGAAAGACCAGGC
(((((....))).))....((((((((...(((((....)))))((((((((((.(........).)))).))).))).......))))))))........... ( -36.40)
>DroSec_CAF1 98696 104 - 1
GCUAGGAAACUAUGUACAAUGUGGUGCUUCGUGCCCCAAGGUACCCAUCCUGCGUCACUCAUACGGCGCGUGGACAGCACAGAGUGUACCACGAAAGACCUGGC
((((((.......(((((.((((.((....(((((....)))))...(((((((((........)))))).))))).))))...)))))..(....).)))))) ( -39.50)
>DroSim_CAF1 94357 104 - 1
GCUAGGAAACUAUGUACAAUGUGGUGCUUCGUGCCCCAAGGUACCCGUCCUGCGUCACUCAUGCGCCGCGUGGACCGCACAGAGUGUACCACGAAAGACCUGGC
((((((.......(((((.....((((...(((((....)))))..((((((((.(.(....).).)))).)))).))))....)))))..(....).)))))) ( -38.30)
>DroEre_CAF1 93493 104 - 1
GCUAGGAAACUAUGCACAAUGUGGUGCUUCGUGCCCCAGGGAACGCGUCCUGCGUCACUCAUACGCCGCGUGGACCCCACAGUCUGUGCCACGAAACACCAGGC
(((((....))).))....(.(((((.((((((.....(((..(((((...((((.......)))).)))))..)))(((.....))).)))))).))))).). ( -38.80)
>DroYak_CAF1 81460 104 - 1
GCUAGGAAACUAUGUACAAUGUGCUGCUUCGUGCCCCAGGGAACGCGUUCUGCGUCACUCAUACGCCGCGUGCACCACACAGAGUGUGCCACGAAACACCAGGC
(((.((.......((((...))))((.((((((((....)).(((((....((((.......)))))))))((((.((.....)))))))))))).)))).))) ( -28.90)
>DroAna_CAF1 98697 100 - 1
GCUAUGAAACUACG----AGUUUUUGGUGUAUACCCCAGGGUAUGGUAUCUAUGUCACUCAUCCGCCGUGUGGUACAUAUAUAGUAUCAAACUGUGUGCGAUGC
((((.(((((....----.))))))))).((((((....))))))..............((((((((((.((((((.......)))))).)).).))).)))). ( -22.90)
>consensus
GCUAGGAAACUAUGUACAAUGUGGUGCUUCGUGCCCCAGGGUACGCGUCCUGCGUCACUCAUACGCCGCGUGGACCGCACAGAGUGUACCACGAAAGACCAGGC
(((((....))).))....((((((((...(((((....)))))..((((((((.(........).)))).))))..........))))))))........... (-24.64 = -23.73 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:42 2006