Locus 1279

Sequence ID 3L_DroMel_CAF1
Location 3,694,616 – 3,694,712
Length 96
Max. P 0.999914
window1997

overview

Window 7

Location 3,694,616 – 3,694,712
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 98.54
Mean single sequence MFE -25.44
Consensus MFE -25.32
Energy contribution -25.12
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -3.06
Structure conservation index 1.00
SVM decision value 4.53
SVM RNA-class probability 0.999914
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3694616 96 + 23771897
GACAAACGAAAGUAAAGUGUGCAAUGUAAUUACAAAUUAAAAGCAUUGGCAGCCAAAUGGCCAAGUCGCUGGAACAAAAAACCAUGUUGCAGCGGC
.....((....))....(((.((((((..(((.....)))..)))))))))(((....)))...(((((((.((((........)))).))))))) ( -26.80)
>DroSec_CAF1 90017 96 + 1
GACAAACGAAAGUAAAGUGUGCAAUGUAAUUACAAAUUAAAAGCAUUGGCAGCCAAAUGGCCAAGUCGCUGGAACAAAAAACCAUGUUGCAGCGGC
.....((....))....(((.((((((..(((.....)))..)))))))))(((....)))...(((((((.((((........)))).))))))) ( -26.80)
>DroSim_CAF1 85616 96 + 1
GACAAACGAAAGUAAAGUGUGCAAUGUAAUUACAAAUUAAAAGCAUUGGCAGCCAAAUGGCCAAGUCGCUGGAACAAAAAACCAUGUUGCAGCGGC
.....((....))....(((.((((((..(((.....)))..)))))))))(((....)))...(((((((.((((........)))).))))))) ( -26.80)
>DroEre_CAF1 84792 96 + 1
GACAAACGAAAGUAAAGUGUGCAAUGUAAUUACAAAUUAAAAGCAUUGGCAGCCAAAUGGCCAAGACGCUGGAACGAAAAACCAUGUUGCAGCGGC
.....((....))....(((.((((((..(((.....)))..)))))))))(((....))).....(((((.((((........)))).))))).. ( -23.20)
>DroYak_CAF1 72447 96 + 1
GACAAACGAAAGUAAAGUGUGCAAUGUAAUUACAAAUUAAAAGCAUUGGCAGCCAAAUGGCCAAGUUGCUGGAACGAAAAACCAUGUUGCAGCGGC
.....((....))....(((.((((((..(((.....)))..)))))))))(((....)))...(((((((.((((........)))).))))))) ( -23.60)
>consensus
GACAAACGAAAGUAAAGUGUGCAAUGUAAUUACAAAUUAAAAGCAUUGGCAGCCAAAUGGCCAAGUCGCUGGAACAAAAAACCAUGUUGCAGCGGC
.....((....))....(((.((((((..(((.....)))..)))))))))(((....)))...(((((((.((((........)))).))))))) (-25.32 = -25.12 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:40 2006