| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,694,012 – 3,694,106 |
| Length | 94 |
| Max. P | 0.683295 |
| Location | 3,694,012 – 3,694,106 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 84.53 |
| Mean single sequence MFE | -29.38 |
| Consensus MFE | -21.28 |
| Energy contribution | -22.08 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3694012 94 + 23771897 UUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCA-----UUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCACUUUUCCCG .(((((((...(((((((((.(((((.(((((((....)))-----))))..))))).)))).)))))(((....))).....)))))))......... ( -31.20) >DroSec_CAF1 89358 94 + 1 CUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCA-----UUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCACUUUUGCCG ..(((((.....)))))(((.(((((.(((((((....)))-----))))..)))))..............(((((........)))))......))). ( -32.60) >DroSim_CAF1 84995 94 + 1 UUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCA-----UUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCACUUUUGUCG .(((((((...(((((((((.(((((.(((((((....)))-----))))..))))).)))).)))))(((....))).....)))))))......... ( -31.20) >DroEre_CAF1 84146 99 + 1 UUGCAGCAACAUGUUGCCGCCGUAACUGCAAUGCAACUGCAUUGCAUUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCACUUCUGCCG ..((((.....((((((.((.(((((.(((((((((.....)))))))))..))))).)).).)))))...(((((........)))))....)))).. ( -31.40) >DroYak_CAF1 71794 94 + 1 UUGCAGCAACAUGUUGCCGCCGUAACUGCAAUGCAACUGCA-----UUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCACUUUUGUUG (((((((((...(((((....))))).(((((((....)))-----)))))))))))))....(((((((((((((........)))))..)))))))) ( -31.10) >DroAna_CAF1 89346 71 + 1 UUGCAGCAACAUGUUGCUGCCUCGUC----------------------------UGCGGCUGUCAAUAGAAGCGAUUUGAAAUUGUUGCACAUUUCCCG ..(((((((....)))))))......----------------------------((((((..((((..........))))....))))))......... ( -18.80) >consensus UUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCA_____UUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCACUUUUGCCG .(((((((.((.(((((.....((((((((((((((..........))))..))))))))))((....)).))))).))....)))))))......... (-21.28 = -22.08 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:39 2006