Locus 1275

Sequence ID 3L_DroMel_CAF1
Location 3,687,335 – 3,687,427
Length 92
Max. P 0.724757
window1991

overview

Window 1

Location 3,687,335 – 3,687,427
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.66
Mean single sequence MFE -20.91
Consensus MFE -13.09
Energy contribution -12.95
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.63
SVM decision value 0.41
SVM RNA-class probability 0.724757
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3687335 92 + 23771897
AUGUUAUGAAAACGCAGGCCGCAA-----AAAAAAAACCAAUAAUACUGCGGGCUUGCAUUUUGCCAAUUGCAAUUGUUUUCCUCUUUUUUUCGGAU
.......((((((((((((((((.-----..................))).)))))))...((((.....))))..))))))............... ( -21.41)
>DroSec_CAF1 82696 91 + 1
AUGUUAUGAAAACGCAGGCCGCAA-----AAAAAAAACCAAUAAUACUGCGGGCUUGCAUUUUGCCAAUGGCAAUUGUUUUCCUCUAU-UUUCGGAU
.......((((((((((((((((.-----..................))).)))))))...(((((...)))))..))))))......-........ ( -23.81)
>DroSim_CAF1 77672 89 + 1
AUGUUAUGAAAACGCAGGCCGCAA-----AA--AAAACCAAUAAUACUGCGGGCUUGCAUUUUGCCAAUUGCAAUUGUUUUCCUCUAU-UUUCGGAU
.......((((((((((((((((.-----..--..............))).)))))))...((((.....))))..))))))......-........ ( -21.53)
>DroEre_CAF1 77209 89 + 1
AUGUUAUGAAAACGCAGGCCGCAA-------AAAAAACCAAUAAUACUGCGGGCUUGCAUUUUGCCAAUUGCAAUUGUUUUCCUCUAU-UUUCGAGU
.......((((((((((((((((.-------................))).)))))))...((((.....))))..))))))(((...-....))). ( -22.43)
>DroYak_CAF1 64731 96 + 1
AUGUUAUGAAAACGCAGGCCGCAAGAAAAAAAAAAAACAAAUAAUACUGCGGGCUUGCAUUUGGCCAAUUGCAAUUGUUUUCCUCUAC-UUGCGAAU
.......((((((((((((((((........................))).))))))).....((.....))....))))))......-........ ( -19.56)
>DroPer_CAF1 150245 69 + 1
-UGUUAUGAAAACGCAGCC-------------------AAAUAAAACUGCGGGCACUGCUUUGGCCAAUU------GUUUUUGGCGGU-AUUCAG-U
-.....((((.((...(((-------------------(((...(((....(((.(......))))....------))))))))).))-.)))).-. ( -16.70)
>consensus
AUGUUAUGAAAACGCAGGCCGCAA_____AAAAAAAACCAAUAAUACUGCGGGCUUGCAUUUUGCCAAUUGCAAUUGUUUUCCUCUAU_UUUCGGAU
.......((((((((((.............................)))).(((.........)))..........))))))............... (-13.09 = -12.95 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:35 2006