Locus 1273

Sequence ID 3L_DroMel_CAF1
Location 3,679,297 – 3,679,390
Length 93
Max. P 0.707018
window1989

overview

Window 9

Location 3,679,297 – 3,679,390
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 91.64
Mean single sequence MFE -25.16
Consensus MFE -19.38
Energy contribution -20.58
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.77
SVM decision value 0.37
SVM RNA-class probability 0.707018
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3679297 93 + 23771897
GCUUUUUGUUUAGCUCUUCCUUGGGCCGCCGAAGUAUGUGUGGCUGUUGUCUUAUAUCUGAAGUCAACGCCCACCAGACAUGGCCAA----AAAAAA
..((((((....((((......)))).((((..((.((.((((.(((((.(((.......))).))))).)))))).)).)))))))----)))... ( -26.60)
>DroSec_CAF1 74703 94 + 1
GCUUUUUGUUUAGCUCUUCCUUGGGCCGCCGAUGUAUGUGUGUUUGUUGUCUUAUAUCUGAAGUCAACGCCCACCAGACAUGGCAAA---CAAAAAU
..(((((((((.((((......)))).(((.((((.((.(((..(((((.(((.......))).)))))..))))).))))))))))---)))))). ( -31.40)
>DroSim_CAF1 69521 93 + 1
GCUUUUUGUUUAGCUCUUCCUUGGGCCGCCGAUGUAUGUGUGGUUGUUGUCUUAUAUCUGAAGUCAACGCCCACCAGACAUGGCAAA----AAAAAU
............((((......)))).(((.((((.((.((((.(((((.(((.......))).))))).)))))).)))))))...----...... ( -28.40)
>DroEre_CAF1 69136 97 + 1
GCUUUUUGUUUGGCUCUUCCUUAGGCCGCCGAUGUAUUUGUAGUUGUUGUCUUAUAUCUGAAGUCAACGCCCACCAGACAUGGCCAGAAAAAAAAAU
..((((((...(((.((.....)))))(((.((((....((.(.(((((.(((.......))).))))).).))...)))))))))))))....... ( -21.90)
>DroYak_CAF1 55915 96 + 1
GCUUUUUGUUUAGCUCUUCCUCAGGCCGCCGAUGUAUUUGUAGUUGUUGUCUUAUAUCUCAAGUCAACGCCCACCAGACAUGGCCAA-AAAAAAAAU
(((........))).........((((....((((....((.(.(((((.(((.......))).))))).).))...))))))))..-......... ( -17.50)
>consensus
GCUUUUUGUUUAGCUCUUCCUUGGGCCGCCGAUGUAUGUGUGGUUGUUGUCUUAUAUCUGAAGUCAACGCCCACCAGACAUGGCCAA____AAAAAU
............((((......)))).(((.((((....((((.(((((.(((.......))).))))).))))...)))))))............. (-19.38 = -20.58 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:33 2006