Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,671,826 – 3,671,922 |
Length | 96 |
Max. P | 0.979566 |
Location | 3,671,826 – 3,671,922 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 89.34 |
Mean single sequence MFE | -28.14 |
Consensus MFE | -23.22 |
Energy contribution | -23.88 |
Covariance contribution | 0.66 |
Combinations/Pair | 1.04 |
Mean z-score | -2.17 |
Structure conservation index | 0.83 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3671826 96 + 23771897 U----UUGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU .----.....................(..(((((.((((......((((((.((((((.......)))))).)))))))))).)).)))..)........ ( -29.30) >DroSec_CAF1 66927 96 + 1 U----UCGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGCCUGCAUUGUUGU .----.....................(..((((((.((((.(((.((((((.((((((.......)))))).)))))).)))..)))).))))..))..) ( -31.50) >DroSim_CAF1 61697 96 + 1 U----UCGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU .----.....................(..(((((.((((......((((((.((((((.......)))))).)))))))))).)).)))..)........ ( -29.30) >DroEre_CAF1 61312 95 + 1 -----UCGAUUUUUCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGUUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU -----.....................(..(((((.((((......((((((.((((((.......)))))).)))))))))).)).)))..)........ ( -27.80) >DroYak_CAF1 47777 87 + 1 UUCAUUCGAUUUUUCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCCGCUUGC-------------UAGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU ..................((((.((((((((.((........)).)))))))).-------------)))).((((((.....))))))........... ( -22.80) >consensus U____UCGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU ..........................(..((((((..(((.(((.((((((.((((((.......)))))).)))))).)))..)))..))))..))..) (-23.22 = -23.88 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:31 2006