Locus 1270

Sequence ID 3L_DroMel_CAF1
Location 3,669,906 – 3,669,998
Length 92
Max. P 0.989647
window1986

overview

Window 6

Location 3,669,906 – 3,669,998
Length 92
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 69.54
Mean single sequence MFE -20.37
Consensus MFE -10.96
Energy contribution -11.16
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.54
SVM decision value 2.17
SVM RNA-class probability 0.989647
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3669906 92 - 23771897
UCACCGAAAAAAGUGCGCAGAAAAUAUAAA----UUUUCCCCAUUCGA-AUCUAUAAUUUCGCAUCAUUAUUUUCGCUCAGUGCAGCUGGCGCUGAG
....((((((.((((.((.((((((....)----))))).......((-(........)))))..)))).))))))((((((((.....)))))))) ( -24.10)
>DroSec_CAF1 64989 97 - 1
UCACUGAAAAGAGUGGACAGAAAAUAUUAAAAAUAUUUCCCCAUUCGAAAUUUAUAAUUUCCCAUCAUUAUUUUCGCUCAGUGCUGCUGGCGCUGAG
.....(((((((((((...((((.(((.....))))))).))))))(((((.....))))).........))))).((((((((.....)))))))) ( -23.90)
>DroSim_CAF1 59753 93 - 1
UAACCAAAUAUAGUGCACAGAAAAAAUUAA----UUUUCCCCAUUUGAAAUAUUUAAUUUCCCAUCAUUAUUUUCGCUCAGUGCAGCUGGCGCUGAG
.........((((((....(((((......----))))).......(((((.....)))))....)))))).....((((((((.....)))))))) ( -16.20)
>DroEre_CAF1 59403 72 - 1
--------------------GAAAUAUUCA----UUU-ACCCACUCGAAAUAUAUAAUGUUGGAUCAUUAUUUUCGCUCAGUGCGAAUGGCGCUGAG
--------------------..........----...-.......(((((...((((((......)))))))))))((((((((.....)))))))) ( -17.70)
>DroYak_CAF1 45797 86 - 1
-------GUUUUGUGCCCAGUAAAUAUUCA----UUUUUCCUAUUCAAAACAUAUGACUUUGCACUGAUAAAUUCGCUCAGUGCAACUGGAGCUGAG
-------.......(((((((......(((----(..................))))...((((((((.........))))))))))))).)).... ( -19.97)
>consensus
U_AC__AAAAUAGUGCACAGAAAAUAUUAA____UUUUCCCCAUUCGAAAUAUAUAAUUUCGCAUCAUUAUUUUCGCUCAGUGCAGCUGGCGCUGAG
............................................................................((((((((.....)))))))) (-10.96 = -11.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006