Locus 127

Sequence ID 3L_DroMel_CAF1
Location 408,362 – 408,452
Length 90
Max. P 0.640139
window179

overview

Window 9

Location 408,362 – 408,452
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 96.28
Mean single sequence MFE -20.45
Consensus MFE -17.54
Energy contribution -17.71
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.86
SVM decision value 0.22
SVM RNA-class probability 0.640139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 408362 90 + 23771897
UAGGAUUAUUCGGC-AUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUCGAGUGGAUUUCUUUUUAAUCCCC
..(((((((((((.-(((.((...(((....)))...)).))).)))))...((((.(((((......)))))))))......)))))).. ( -19.90)
>DroSec_CAF1 55269 89 + 1
UAGGAUUAUUCGGC-AUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUCGAGUGGAUUUCUUUUUAAUCCC-
..(((((((((((.-(((.((...(((....)))...)).))).)))))...((((.(((((......)))))))))......)))))).- ( -19.90)
>DroSim_CAF1 57384 89 + 1
UAGGAUUAUUCGGC-AUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUCGAGUGGAUUUCUUUUUAAUCCC-
..(((((((((((.-(((.((...(((....)))...)).))).)))))...((((.(((((......)))))))))......)))))).- ( -19.90)
>DroEre_CAF1 59629 89 + 1
UAGGAUUAUGCGGC-AUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUCGAGUGGAUUUCUUUUUAAUCCC-
..((((((((((..-...))))..(((....)))((((((...((((((................))))))..))))))....)))))).- ( -19.89)
>DroYak_CAF1 59634 89 + 1
CAGGAUUAUUCGGC-AUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUCGAGUGGAUUUCUUUUUAAUCCC-
..(((((((((((.-(((.((...(((....)))...)).))).)))))...((((.(((((......)))))))))......)))))).- ( -19.90)
>DroAna_CAF1 49464 90 + 1
UGGGAUUAUUAGGAAAUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUGGAGAGGAUUUCUUUUUAAUCCU-
.(((((((..(((((((((((...(((....)))...))...(((((((((.(((...))).))))))))).)))))))))..)))))))- ( -23.20)
>consensus
UAGGAUUAUUCGGC_AUUUGCAUAUGGUCAGCCAGAGGUCAAUUUCGAAUUUAAUCGUAUUCAAUUUCGAGUGGAUUUCUUUUUAAUCCC_
..((((((................(((....)))((((((...((((((................))))))..))))))....)))))).. (-17.54 = -17.71 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:15 2006