| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,663,946 – 3,664,058 |
| Length | 112 |
| Max. P | 0.950666 |
| Location | 3,663,946 – 3,664,058 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.98 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -15.80 |
| Energy contribution | -17.69 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3663946 112 + 23771897 AACUAGGCGUAUGAGUAAUGAAAGUUAUUCAUACGUAACGUGGUCAUUGGU--------GCACCUAUCAUCUUAACAUAAUAUAAAGUGUAACCAAUUAAAAGCAUGACACUACGCACUU ......(((((((((((((....)))))))))))))..((((((.((((((--------((((.......................)))).))))))............))))))..... ( -28.22) >DroSec_CAF1 59122 118 + 1 AACUAGGCGUAUGAGUAAUGAAAGUUAUUCAUACGUAACGUGGUCAUUGUUGGUAGGGUGCCCCUCUCAGAUUAAA--UAUAUAAAAUUUAGCCAAUUAAAAGCAUGAAACUACGCACUU ...((((((((((((((((....)))))))))))))..((((.(....((((((((((...)))).......((((--(.......)))))))))))....).))))...)))....... ( -30.80) >DroEre_CAF1 53234 111 + 1 AACUGGGCGUAUGCGUGAUUAUAGUCAUUCAUACGAAGUGUGCUCAUUGCUUGAAGGGUGACCC-A------UAAA--CACAUAAAAUGUAGCCAAUUAAAAGCACGAAAUUACGCACUU .......((((((.(((((....))))).))))))(((((((.....(((((...((....)).-.------....--.((((...))))..........)))))........))))))) ( -25.92) >consensus AACUAGGCGUAUGAGUAAUGAAAGUUAUUCAUACGUAACGUGGUCAUUGCU_G_AGGGUGCCCCUAUCA__UUAAA__AAUAUAAAAUGUAGCCAAUUAAAAGCAUGAAACUACGCACUU ......(((((((((((((....)))))))))))))..((((((...((((..................................................))))....))))))..... (-15.80 = -17.69 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:25 2006