Locus 1266

Sequence ID 3L_DroMel_CAF1
Location 3,663,337 – 3,663,427
Length 90
Max. P 0.635810
window1979

overview

Window 9

Location 3,663,337 – 3,663,427
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 94.79
Mean single sequence MFE -26.46
Consensus MFE -26.11
Energy contribution -25.58
Covariance contribution -0.53
Combinations/Pair 1.12
Mean z-score -0.71
Structure conservation index 0.99
SVM decision value 0.21
SVM RNA-class probability 0.635810
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3663337 90 + 23771897
UCCCGAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGAGCAGCGGGCGGCCCCUGGCUUUUUCGA---UU-UUU
...((((.((((.(((((((..(((........))))))........(((((((......))))))))))).).)))...)))).---..-... ( -27.00)
>DroSec_CAF1 58502 89 + 1
UCCCGAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGAGCAGCGGGCGGCCCCUGGCUU-UUCGA---UU-UUU
...((((.((((.(((((((..(((........))))))........(((((((......))))))))))).).)))..-)))).---..-... ( -27.00)
>DroSim_CAF1 53342 89 + 1
UCCCGAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGAGCAGCGGGCGGCCCCUGGCUU-UUCGA---UU-UUU
...((((.((((.(((((((..(((........))))))........(((((((......))))))))))).).)))..-)))).---..-... ( -27.00)
>DroEre_CAF1 52660 90 + 1
UCCCGAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGAGCAGCGGGCGGCCCCUGGCUU-UUUGA---UUUUUU
..(((((.......((..((.........))..)).......)))))(((((((......)))))))((((...)))).-.....---...... ( -26.14)
>DroYak_CAF1 38834 93 + 1
UCCCGAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGAGCAGCGGGCGGCCCCUGGCUU-UUUGGCUUUUUUUU
..(((((.((((.(((((((..(((........))))))........(((((((......))))))))))).).)))..-)))))......... ( -27.50)
>DroAna_CAF1 55383 88 + 1
UCGCAAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGACCAGCGGGUGGCCCCUGGCUU-UUUGU---U--UUU
..(((((.((((.(((((((..(((........))))))........(((((((......))))))))))).).)))..-)))))---.--... ( -24.10)
>consensus
UCCCGAAUGCUGCGGCUGAUUAUGCAAUUAUUGGCAAUCACUUUCGGGCCCGUUUAGAGCAGCGGGCGGCCCCUGGCUU_UUCGA___UU_UUU
...((((.((((.(((((((..(((........))))))........(((((((......))))))))))).).)))...)))).......... (-26.11 = -25.58 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006