| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,661,977 – 3,662,076 |
| Length | 99 |
| Max. P | 0.722290 |
| Location | 3,661,977 – 3,662,076 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.73 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -17.07 |
| Energy contribution | -17.18 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3661977 99 + 23771897 AAAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCG-----------AGCUCUUGUUGCUGUUGUGUAUGC--UGUUG------CUGCUGCA ...........((..(((((...(((((((....)))))))((((((....((.((((((((-----------(....))))))))).)).))))))--)))))------..)).... ( -28.40) >DroPse_CAF1 76042 101 + 1 AAAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCGCCAACCACCAGAGUCGUUGUUGCUGUUGU-----------UG------UUGCAGCA ...........((.(((((((.((((((((....)))))))).)))))......((((((((.((((.((....)).)))).)))))))).-----------.)------).)).... ( -28.20) >DroSec_CAF1 57079 84 + 1 AUAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCG-----------AGCUCUUGUUGU-----------------UG------CUGCUGCA ................(((((.((((((((....)))))))).)))))....((.(((((((-----------(((....))..)-----------------))------))))))). ( -23.50) >DroSim_CAF1 51926 96 + 1 AAAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCG-----------AGCUCUUGUUGCUGUUGUGUAUGC-----UG------CUGCUGCA ...........((..((......(((((((....)))))))((((((....((.((((((((-----------(....))))))))).)).))))))-----..------.))..)). ( -25.80) >DroAna_CAF1 54040 107 + 1 AAAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCG-----------AGCAGUUGUUGCUGUUGCAGUUGCAGUGUUGCUGGUGGUGCUGCA ...........((((((((((.((((((((....)))))))).)))))...(((((((((((-----------((((((....))))))((....))..))))))))))))))..)). ( -38.50) >DroPer_CAF1 115304 101 + 1 AAAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCGCCAACCACCAGAGUCGUUGUUGUUGUUGU-----------UG------UUGCAGCA ...........((.(((((((.((((((((....)))))))).)))))......((((((((.((((.((....)).)))).)))))))).-----------.)------).)).... ( -25.80) >consensus AAAUAUCUCACGCCACAAUAUUUAAGAUGCCAAAGCGUUUUGCGUAUUAAUCGCCAGCAGCG___________AGCUCUUGUUGCUGUUGU___________UG______CUGCUGCA ...........((...(((((.((((((((....)))))))).)))))......((((((((.................))))))))............................)). (-17.07 = -17.18 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:21 2006