Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,659,088 – 3,659,200 |
Length | 112 |
Max. P | 0.957523 |
Location | 3,659,088 – 3,659,200 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -32.96 |
Consensus MFE | -25.30 |
Energy contribution | -24.58 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.20 |
Mean z-score | -2.45 |
Structure conservation index | 0.77 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3659088 112 - 23771897 AACUUGAUUCGGGCAUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAAGUCAAUUAGAUCUGAUCUGAUGCAGAGGAACAAAAUCCCCACGUCUUGGGAUGUAACU .((((((.(((.(.((((((((((((.....)))))))))))).).))).))))))...(((.((((.(...((((..(.(((......))))..)))).).)))).))).. ( -34.30) >DroSec_CAF1 54181 112 - 1 AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUGGGAUCUGUGAUUUAAGUCAAUUAUAUCUGAUCUGAUGCAGAGUAAAAAAAUCACACCGUCUUGGGUUGUAACU ((((..(..(((...(..((((((((.....))))))))..)..((((((((...(((........)))((((...))))......)))))))))))..)..))))...... ( -32.70) >DroSim_CAF1 49027 111 - 1 AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUG-GAUCUUUGAUUUAAGUCAAUUAGAUCUGAUCUGAUGCCGAGUAAAAAAUUCACACCGUCUUGGGAUGUAACC ..((..(..(((((....((((((((.....))))))))-((((...(((((((.....))))))).))))....)))((((.....))))....))..)..))........ ( -31.40) >DroEre_CAF1 48391 112 - 1 AACUUGAUUCGGACUUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAGGUCUAUUAGAUCUAAUCUGAUGCAGAGUAAAAAAUGCACUCCAUUUUGGGAUGUAUCA .((((...(((((..(((((((((((.....)))))))))))........(((((((.....))))))))))))....)))).....(((((..((.....))..))))).. ( -34.40) >DroYak_CAF1 34530 112 - 1 AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAAGUCUAUUAGAUCUGAUCUGAUGCAGAGUAAAAAAUGCACACCGUCUUGGGAUGUAGCA .((((((.(((.(..(((((((((((.....)))))))))))..).))).)))))).((((((((...))))))))............((((((((......)).))).))) ( -32.00) >consensus AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAAGUCAAUUAGAUCUGAUCUGAUGCAGAGUAAAAAAUUCACACCGUCUUGGGAUGUAACA .((((((.(((.(..(((((((((((.....)))))))))))..).))).))))))...(((.((((.(...((((....((.........))..)))).).)))).))).. (-25.30 = -24.58 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:20 2006