| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,653,530 – 3,653,621 |
| Length | 91 |
| Max. P | 0.950729 |
| Location | 3,653,530 – 3,653,621 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Mean single sequence MFE | -14.53 |
| Consensus MFE | -6.35 |
| Energy contribution | -5.97 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3653530 91 + 23771897 CAGAGAAAAGAGCAAUAAGAAAAAAGUUCAU-----AAAAAAU-AU-CAAAAGUAAAAUCCAUAUAAAAAGUGUCGCGGGGAAC-CGUGAAUAAUCUGG ((((.....((((............))))..-----.......-..-..........................((((((....)-)))))....)))). ( -16.90) >DroSec_CAF1 48618 90 + 1 CAGAGAAAAGAGCAAUAAGAAA-AAGUUCAU-----AAAAAAU-AU-AAAAAGUAAAAUCCAUAUAAAAAGUGUCGCGGGGAAC-CGUGAAUAAUCUGG ((((.....((((.........-..))))..-----.......-..-..........................((((((....)-)))))....)))). ( -17.00) >DroWil_CAF1 58016 84 + 1 --AAGAAAAUCCCAAAAAGCUGAAAGCUGAUUUCCAAAAAGAG-AC-AAAAA-----------ACAAAAAUUGUUACAGGGGACAUAUGAAUAAUCUUG --.......((((....(((.....)))............(.(-((-((...-----------.......))))).)..))))................ ( -9.60) >DroYak_CAF1 28803 93 + 1 CAGUGAAAAGAGCAAUAAGAAAAAAGUUCAU-----AACAAAAUAUAAAAAAGUAAAAUCCAUAUAAAAAGUGUCGCGGGGAAC-CGUGAAUAAUCUGG (((......((((............))))..-----.....................................((((((....)-))))).....))). ( -14.60) >consensus CAGAGAAAAGAGCAAUAAGAAAAAAGUUCAU_____AAAAAAU_AU_AAAAAGUAAAAUCCAUAUAAAAAGUGUCGCGGGGAAC_CGUGAAUAAUCUGG .........((((............))))............................................((((((....).)))))......... ( -6.35 = -5.97 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:19 2006