Locus 126

Sequence ID 3L_DroMel_CAF1
Location 407,786 – 407,905
Length 119
Max. P 0.526424
window178

overview

Window 8

Location 407,786 – 407,905
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -26.40
Consensus MFE -24.17
Energy contribution -23.73
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.92
SVM decision value -0.01
SVM RNA-class probability 0.526424
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 407786 119 + 23771897
UCCCUCCAAAAUAUUUAACAGAACAAGAUUUAUGGAAUGUCCCUUUUUGUAUUUUAUGUGAAGGCAUUAUGCCAGCCAA-AAGGGUUUCAAGGGUCCCACUCAUAAAUCUUUCAUAAAAG
....................(((..((((((((((((...(((((((.((.(((.....)))(((.....))).)).))-))))).)))..((...))...))))))))))))....... ( -24.10)
>DroSec_CAF1 54705 120 + 1
UCUCUCCAGCAGAUUUAACAGGACAAGAUUUAUGGAAUGUCCCUUUAUUUAUUUUAUGUGAAGGCAUUAUGCCAGCCAAAAAGGGUUUCAGGGGUCCCACUCAUAAAUCUUUCAUAAAAG
.....................((.(((((((((((((...((((((.(((((.....)))))(((.....)))......)))))).))).((....))...))))))))))))....... ( -27.90)
>DroSim_CAF1 56820 120 + 1
UCUCUCCAACAGAUUUAACAGAACAAGAUUUAUGGAAUGUCCCUUUAUUUAUUUUAUGUGAAGGCAUUAUGCCAGCCAAAAAGGGUUUCAGGGGUCCCACUCAUAAAUCUUUCAUAAAAG
....................(((..((((((((((((...((((((.(((((.....)))))(((.....)))......)))))).))).((....))...))))))))))))....... ( -27.20)
>consensus
UCUCUCCAACAGAUUUAACAGAACAAGAUUUAUGGAAUGUCCCUUUAUUUAUUUUAUGUGAAGGCAUUAUGCCAGCCAAAAAGGGUUUCAGGGGUCCCACUCAUAAAUCUUUCAUAAAAG
....................(((..((((((((((...(.(((((.................(((.....)))((((......))))..))))).)....)))))))))))))....... (-24.17 = -23.73 +  -0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:11 2006