Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 407,786 – 407,905 |
Length | 119 |
Max. P | 0.526424 |
Location | 407,786 – 407,905 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -24.17 |
Energy contribution | -23.73 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.63 |
Structure conservation index | 0.92 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 407786 119 + 23771897 UCCCUCCAAAAUAUUUAACAGAACAAGAUUUAUGGAAUGUCCCUUUUUGUAUUUUAUGUGAAGGCAUUAUGCCAGCCAA-AAGGGUUUCAAGGGUCCCACUCAUAAAUCUUUCAUAAAAG ....................(((..((((((((((((...(((((((.((.(((.....)))(((.....))).)).))-))))).)))..((...))...))))))))))))....... ( -24.10) >DroSec_CAF1 54705 120 + 1 UCUCUCCAGCAGAUUUAACAGGACAAGAUUUAUGGAAUGUCCCUUUAUUUAUUUUAUGUGAAGGCAUUAUGCCAGCCAAAAAGGGUUUCAGGGGUCCCACUCAUAAAUCUUUCAUAAAAG .....................((.(((((((((((((...((((((.(((((.....)))))(((.....)))......)))))).))).((....))...))))))))))))....... ( -27.90) >DroSim_CAF1 56820 120 + 1 UCUCUCCAACAGAUUUAACAGAACAAGAUUUAUGGAAUGUCCCUUUAUUUAUUUUAUGUGAAGGCAUUAUGCCAGCCAAAAAGGGUUUCAGGGGUCCCACUCAUAAAUCUUUCAUAAAAG ....................(((..((((((((((((...((((((.(((((.....)))))(((.....)))......)))))).))).((....))...))))))))))))....... ( -27.20) >consensus UCUCUCCAACAGAUUUAACAGAACAAGAUUUAUGGAAUGUCCCUUUAUUUAUUUUAUGUGAAGGCAUUAUGCCAGCCAAAAAGGGUUUCAGGGGUCCCACUCAUAAAUCUUUCAUAAAAG ....................(((..((((((((((...(.(((((.................(((.....)))((((......))))..))))).)....)))))))))))))....... (-24.17 = -23.73 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:11 2006