Locus 1259

Sequence ID 3L_DroMel_CAF1
Location 3,642,316 – 3,642,414
Length 98
Max. P 0.704160
window1971

overview

Window 1

Location 3,642,316 – 3,642,414
Length 98
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 75.90
Mean single sequence MFE -28.84
Consensus MFE -9.27
Energy contribution -11.39
Covariance contribution 2.12
Combinations/Pair 1.32
Mean z-score -1.86
Structure conservation index 0.32
SVM decision value 0.36
SVM RNA-class probability 0.704160
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3642316 98 + 23771897
GAUCUGACACUUGGGCUGGCAACCCU--AGCCCAUAUCGCCCGUUUAUAUCGGUCAAUGGAGAUGGGAUUACGAUUUGGUCAGAAGUAAUAAGG---UUGU-CC
..((((((...((((((((.....))--)))))).(((((((((((.(((......))).)))))))....))))...))))))..........---....-.. ( -30.20)
>DroSec_CAF1 31756 92 + 1
GAUCUAAUACUUGGGCUGGCAACCCU--AGCCAUUAUCGCCCGUUUACAUCAAU------CGAUGGGCUUUCGAUUUGGCCAGAAGUGAUAAGG---UUGU-CC
(((((........((((((.....))--))))..((((((.......((((...------.))))((((........))))....)))))))))---))..-.. ( -25.70)
>DroSim_CAF1 32321 92 + 1
GAUCUGACACUUGGGCUGGCAACCCU--AGCCAUUAUCGCCCGUUUACAUCGAU------AGAUGGGCUUUCGAUUUGGCCAGAAGUGAUAAGG---UUGU-CC
(((((..(((((.(((((((......--.)))......(((((((((......)------)))))))).........))))..)))))...)))---))..-.. ( -31.10)
>DroEre_CAF1 31718 96 + 1
GAUCUGACGCUUGGGCUGGCAACCCU--AGCCAUUAUCGCCCAUUUAGAUCGAU------CGUUGUUUUUACGAUUUGGCCAGAAGUGAUAAGGUGUUCGUUCA
((.(.(((((((.((((((.....))--))))..((((((...(((.(..((((------(((.......)))).)))..).)))))))))))))))).).)). ( -26.80)
>DroYak_CAF1 17433 81 + 1
--------------ACGGGCAACCCUAUAGCCAUUAUCGCCCAUUUGGAUCGAU------CGAGGUUUUUAUGCUUCGGUCAGAAGUGAUAUGG---UUGUUCU
--------------..((....))..((((((((.(((((((....))...(((------((((((......)))))))))....)))))))))---))))... ( -30.40)
>consensus
GAUCUGACACUUGGGCUGGCAACCCU__AGCCAUUAUCGCCCGUUUACAUCGAU______CGAUGGGCUUACGAUUUGGCCAGAAGUGAUAAGG___UUGU_CC
.......(((((.(((((((.........)))......(((((((................))))))).........))))..)))))................ ( -9.27 = -11.39 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:16 2006