Locus 1258

Sequence ID 3L_DroMel_CAF1
Location 3,637,859 – 3,637,953
Length 94
Max. P 0.605138
window1970

overview

Window 0

Location 3,637,859 – 3,637,953
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 89.72
Mean single sequence MFE -16.41
Consensus MFE -12.51
Energy contribution -14.84
Covariance contribution 2.34
Combinations/Pair 1.09
Mean z-score -2.25
Structure conservation index 0.76
SVM decision value 0.14
SVM RNA-class probability 0.605138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3637859 94 + 23771897
UCUUCAAAAUAAAGCAAGGUAUCAAAUGAAAUAUGUAUAUGCAUUACAAAUAUGCAUGCCCUACAACAAAGACACAAGAAUAUUCAAGUGUCUU
................(((..((....))..(((((((((.........))))))))).)))......(((((((..((....))..))))))) ( -15.40)
>DroSec_CAF1 27348 94 + 1
UCUUCAAAAUAAAACAGGGUAUGAAAUGAAAUAUGUAUAUGCAUUGCAAAUAUGCAUGCCCUACAACAAAGACAUAAGAAUACUCUAGUGUUUU
...............((((((((.........((((....))))..........))))))))......(((((((.(((....))).))))))) ( -19.91)
>DroSim_CAF1 27865 89 + 1
UCUUCAAAAUAAAACAGGGUAUGAAAUGAAAUAUGUAUAUGCAUUGAAAAUAUGCAUGCCCUAAAACAAAGACAUAAGAAUACUCUAGU-----
...............((((((((.........((((....))))..........))))))))...........................----- ( -13.91)
>consensus
UCUUCAAAAUAAAACAGGGUAUGAAAUGAAAUAUGUAUAUGCAUUGCAAAUAUGCAUGCCCUACAACAAAGACAUAAGAAUACUCUAGUGU_UU
...............((((((((.........((((....))))..........))))))))......(((((((.(((....))).))))))) (-12.51 = -14.84 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:15 2006