Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,632,219 – 3,632,327 |
Length | 108 |
Max. P | 0.886590 |
Location | 3,632,219 – 3,632,327 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 95.20 |
Mean single sequence MFE | -31.34 |
Consensus MFE | -26.94 |
Energy contribution | -26.98 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.58 |
Structure conservation index | 0.86 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3632219 108 - 23771897 ACCGGCAGCGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGUGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAAACACAAUG ...((((((...(((((.((((((-((......))))).......((((....))))......))).))))).....))))))........(((........))).... ( -32.40) >DroSec_CAF1 21826 108 - 1 ACCGGCAGUGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGAACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCUCGAAACACAAUG ...((((((...(((((.((((((-((......)))))..(((.((((....))))...))).))).))))).....))))))........(((........))).... ( -32.80) >DroSim_CAF1 22245 108 - 1 ACCGGCAGCGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAAACACAAUG ...((((((...(((((.((((((-((......)))))......((((....)))).......))).))))).....))))))........(((........))).... ( -34.30) >DroEre_CAF1 21579 108 - 1 ACCAGCGGCGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGGGGAUCUCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAACAACGUGCCACGAAACACAAUG ....(((((...(((((.((((((-((......))))).......(.((....)).)......))).))))).....))))).........(((........))).... ( -26.70) >DroYak_CAF1 6959 109 - 1 ACCGGCGGCGUUAUUAGUGCCCCUUUUCCCAAAAAAGGAUUUCCCGGGCAUCCCCGCACGUUCGGGUCUAAUUGAAAGCUGCCCAAGCAACGUGCCUCGAAACACAAUG ...((((((...((((((((((....(((.......)))......)))))..((((......)))).))))).....))))))........(((........))).... ( -30.50) >consensus ACCGGCAGCGUUAUUAGUGCCCCU_UUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAAACACAAUG ...((((((...(((((.(((.....(((.......))).....((((....)))).......))).))))).....))))))........(((........))).... (-26.94 = -26.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:14 2006