Locus 1256

Sequence ID 3L_DroMel_CAF1
Location 3,625,440 – 3,625,538
Length 98
Max. P 0.723990
window1968

overview

Window 8

Location 3,625,440 – 3,625,538
Length 98
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 94.66
Mean single sequence MFE -30.88
Consensus MFE -28.20
Energy contribution -28.45
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.91
SVM decision value 0.41
SVM RNA-class probability 0.723990
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3625440 98 - 23771897
GUAACCUGCAACAGGCAAGCAGCAACAUUGCAAGUGCA------ACUGAAACUGAGUUUGCUGCUUUGGCAUUUCUCAGGUGAAUGGCAGCCGAAACGUGAGGA
....(((.((...((((((((((((...(((....)))------(((.......))))))))))))((.(((((.......))))).)))))......))))). ( -27.20)
>DroSec_CAF1 15111 104 - 1
GUAACCUGCAACAGGCAAGCAGCAACAUAGCAAGUGCAACUGCAACUGAAACUGAGGUUGCUGCUUUGGCAUUUCUCAGGUGAAUGGCAGCCGAAACGUGAGGA
....(((.((...(((((((((((((.(((..(((((....)).)))....)))..))))))))))((.(((((.......))))).)))))......))))). ( -32.90)
>DroSim_CAF1 15000 98 - 1
GUAACCUGCAACAGGCAAGCAGCAACAUUGCAAGUGCA------ACUGAAACUGAGGUUGCUGCUUUGGCAUUUCUCAGGUGAAUGGCAGCCGAAACGUGAGGA
....(((.((...(((((((((((((.((((....)))------)((.......))))))))))))((.(((((.......))))).)))))......))))). ( -31.30)
>DroEre_CAF1 14852 104 - 1
GUAACCUGCAACAGGCAAGCAGCAACAUUGCAAGUGCAACUGCAACUAAAACUGAGGUUGCUGCUUUGGCAUUUCUCAGGUGAAUGGCAGCCGAAACGUGAGGA
....(((.((...(((((((((((((.((((....))))((.((........))))))))))))))((.(((((.......))))).)))))......))))). ( -32.10)
>consensus
GUAACCUGCAACAGGCAAGCAGCAACAUUGCAAGUGCA______ACUGAAACUGAGGUUGCUGCUUUGGCAUUUCUCAGGUGAAUGGCAGCCGAAACGUGAGGA
....(((.((...(((((((((((((...((....))........((.......))))))))))))((.(((((.......))))).)))))......))))). (-28.20 = -28.45 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:13 2006