Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,619,725 – 3,619,818 |
Length | 93 |
Max. P | 0.967101 |
Location | 3,619,725 – 3,619,818 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 86.04 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -17.99 |
Energy contribution | -18.24 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -3.00 |
Structure conservation index | 0.70 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3619725 93 - 23771897 CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAUAUAAAGCCCAAAAGCCGAACGACAAACCACAAAACAAGCCACGUUGAUUGCCCGCUU .(((((((((((..(((((((-----------....)).)))))........((......)).....)))...........(((......)))...)))))))) ( -24.10) >DroPse_CAF1 24872 93 - 1 CAGGUGGGCGUCAAUUGGAGCAGCAGCCGAGCAGCUGCAUCCAAAA--UAAGACCCCAA---------ACAAAUGGCAAAACAAGCCGAAAUGAUUGCCCGCUU .((((((((((((.((((((((((.((...)).))))).)))))..--...........---------.....((((.......))))...))).))))))))) ( -35.40) >DroSec_CAF1 9771 93 - 1 CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACGUUGAUUGCCCGCUU .(((((((((((..(((((((-----------....)).)))))................(.....))))...((((............))))...)))))))) ( -23.70) >DroSim_CAF1 9290 93 - 1 CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACGUUGAUUGCCCGCUU .(((((((((((..(((((((-----------....)).)))))................(.....))))...((((............))))...)))))))) ( -23.70) >DroEre_CAF1 9173 93 - 1 CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACAUUGAUUGCCCGCUU .(((((((((((..(((((((-----------....)).)))))................(.....))))...........(((......)))...)))))))) ( -22.40) >consensus CAGGUGGGCGUCAAUUGGAGC___________AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACGUUGAUUGCCCGCUU .((((((((((((((((((((.((......)).)))..........................(....).................))).))))).))))))))) (-17.99 = -18.24 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:12 2006