Locus 1254

Sequence ID 3L_DroMel_CAF1
Location 3,609,982 – 3,610,092
Length 110
Max. P 0.999372
window1966

overview

Window 6

Location 3,609,982 – 3,610,092
Length 110
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 95.29
Mean single sequence MFE -29.98
Consensus MFE -27.14
Energy contribution -27.26
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -2.38
Structure conservation index 0.91
SVM decision value 3.55
SVM RNA-class probability 0.999372
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3609982 110 - 23771897
UUCGGCUUGUAUCUUAUUUGUAUCUGUAUCUCUUGUUCCUCUCGAUAUGCUGUAUAUAUGGGCAGUAAAUUCGUUGCAAUAUUCUACAGAUAAUGGUAAGGCACUUGCGG-
....((..((..((((((..((((((((....((((......(((..((((((........))))))...)))..)))).....))))))))..))))))..))..))..- ( -29.10)
>DroSec_CAF1 134585 110 - 1
UUCGGCUUGUAUCUUAUUUGUAUCUGUAUCUCUUGUUCCUCUCGAUAUGCUGUAUGUAUGGGCAGUAAAUUCGUUGCAAUAUUCUACAGAUAAUGGUAAGGCACUUGCUG-
..((((..((..((((((..((((((((....((((......(((..((((((........))))))...)))..)))).....))))))))..))))))..))..))))- ( -31.00)
>DroSim_CAF1 140488 110 - 1
UUCGGCUUGUAUCUUAUUUGUAUCUGUAUCUCUUGUUCCUCUCGAUAUGCUGUAUAUAUGGGCAGUAAAUUCGUUGCAAUAUUCUACAGAUAAUGGUAAGGCACUUGCUG-
..((((..((..((((((..((((((((....((((......(((..((((((........))))))...)))..)))).....))))))))..))))))..))..))))- ( -31.00)
>DroEre_CAF1 156962 111 - 1
UUCGGCUUGUAUCUUACUUGUAUCUGUAUCUCUAGUUCCUGUCGAUAUGCUGUAUAUAUGGGCAGUAAAUUCGUUGAAAUAUUCUACAGAUAAUGGUAAGGCACUUGUGGG
..(.((..((..((((((..((((((((.......(((....(((..((((((........))))))...)))..)))......))))))))..))))))..))..)).). ( -31.12)
>DroYak_CAF1 139529 110 - 1
UUCGGCUUGUAUCUUAUUUGUAUCUGUAUCUCGUGUUCCUGUCGAUAUCGUGUAUAUAUGGGCAGUAAAUUCGUUGCGAUAUUCUACAGAUAAUGGUAAGGCACUUGCGG-
....((..((..((((((..((((((((..((((.((.(((((.((((.......)))).))))).)).......)))).....))))))))..))))))..))..))..- ( -27.70)
>consensus
UUCGGCUUGUAUCUUAUUUGUAUCUGUAUCUCUUGUUCCUCUCGAUAUGCUGUAUAUAUGGGCAGUAAAUUCGUUGCAAUAUUCUACAGAUAAUGGUAAGGCACUUGCGG_
....((..((..((((((..((((((((.....((((.(...(((..((((((........))))))...)))..).))))...))))))))..))))))..))..))... (-27.14 = -27.26 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:11 2006