Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,583,680 – 3,583,784 |
Length | 104 |
Max. P | 0.872796 |
Location | 3,583,680 – 3,583,784 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.73 |
Mean single sequence MFE | -36.45 |
Consensus MFE | -21.63 |
Energy contribution | -21.35 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.93 |
Structure conservation index | 0.59 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3583680 104 + 23771897 CAAAUUGCUGGGCACGCCCACCGAGGACACGUGGCCGGGAGUCACCCACUUUCCCGGCUACAAGCCACACAAGCUGGGUAAGUAAU--UGGCCU--CAGGGCCAGAGA- ..((((((((((....)))(((........(((((((((((.........))))))))))).(((.......))).))).))))))--)((((.--...)))).....- ( -42.80) >DroVir_CAF1 145535 106 + 1 CAAAUUGCUGGGCACGCCCACCGAGGAUACGUGGCAGGGCGUCACACAUUUCCCAGGCUACAAACCGCACAAGUUGGGUGAGUAAU--UGGCCA-GCAGCAUCAGCAGA ....(((((((((((((((.(((.(....).)))..))))))..............((........))....(((((.(((....)--)).)))-)).)).))))))). ( -34.10) >DroPse_CAF1 153894 91 + 1 CAAAUUGCUGGGCACCCCCACCGAGGAGACGUGGACGGGGGUAACCCAUUUCCCGGGUUACAAGCCCCACAAGCUGGGUAAGUAAU--CGACC---------------- ((..(((..((((.((((..(((.(....).)))..))))(((((((.......)))))))..))))..)))..))..........--.....---------------- ( -34.50) >DroGri_CAF1 133993 100 + 1 CAAAUUGCUCGGCACGCCCACCGAGGAUACGUGGCCGGGCUGCACACAUUUCCCUGGCUACAAACCACACAAGUUGGGUGAGUAAUUUUGUCCAGUCAGC--------- .......(((((........)))))(((..(((((((((.............))))))))).............((((..((....))..)))))))...--------- ( -29.32) >DroMoj_CAF1 176518 106 + 1 CAAAUUGCUUGGCACGCCCACCGAGGACACGUGGCAGGGCGUCACACAUUUUCCCGGCUAUAAACCACACAAGCUGGGUAAGUAAU--UGGCCAGGCAGCAUCCUCAC- ....(((((((((((((((.(((.(....).)))..)))))).....((((.(((((((............))))))).))))...--..))))))))).........- ( -39.50) >DroPer_CAF1 135010 91 + 1 CAAAUUGCUGGGCACCCCCGCCGAGGAGACGUGGACGGGGGUAACCCAUUUCCCGGGUUACAAGCCCCACAAGCUGGGUAAGUAAU--CGACC---------------- ((..(((..((((..((((((((.(....).))).)))))(((((((.......)))))))..))))..)))..))..........--.....---------------- ( -38.50) >consensus CAAAUUGCUGGGCACGCCCACCGAGGACACGUGGCCGGGCGUCACACAUUUCCCCGGCUACAAACCACACAAGCUGGGUAAGUAAU__UGGCCA__CAGC_________ ....(((((.(((((((((.(((.(....).)))..)))))).............((.......))......))).)))))............................ (-21.63 = -21.35 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:05 2006