Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 406,383 – 406,502 |
Length | 119 |
Max. P | 0.596033 |
Location | 406,383 – 406,502 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -35.45 |
Consensus MFE | -22.50 |
Energy contribution | -22.70 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -1.71 |
Structure conservation index | 0.63 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 406383 119 + 23771897 AGGUUCCUGAGCAUGGCAAAGACGGUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC .......(((((.((((...(((((....)))))....)))-).)))))..(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -39.30) >DroSim_CAF1 55457 119 + 1 AGGUUCCUGAGCAUGGCAAAGGCGGUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC .......(((((.((((...(((((....)))))....)))-).)))))..(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -38.70) >DroEre_CAF1 57746 119 + 1 AGGUUCCCGGGCAGGGCGAAGACGAUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC ........((((..(((...((((((.....)))))).)))-..))))...(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -38.20) >DroWil_CAF1 68131 100 + 1 --------------------GUCGGUCGCCUGCCGUUGGCCUGGGCUCAAAGUGCCAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGACUGCAGGUCC --------------------...((..((((((.((((..((((((.......)))..((((......((((.(((((...)))))))))......)))))))....)))).)))))))) ( -32.40) >DroYak_CAF1 57684 119 + 1 AGGUUCCCGAGCAUGGCGCUGACGAUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC ........((((...(.(((((((((.....))))))))))-..))))...(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -39.90) >DroAna_CAF1 47469 96 + 1 -----------------GAUGGCGA-----CGCCGUUACCC-GGGCUCAAAGUGCCAUCCCA-GACAAUGCAACAUAACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGUUAC -----------------(((.(((.-----.(((((((.(.-((((.......)))...(((-.....((((.(((.......)))))))......))).).).)))))))))).))).. ( -24.20) >consensus AGGUUCC_GAGCAUGGCGAAGACGAUGUCCUGUCGUUAGCC_AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC ...............................(((((((((...(((.......)))..((((......((((.(((((...)))))))))......))))..)))))))))......... (-22.50 = -22.70 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:07 2006