Locus 1248

Sequence ID 3L_DroMel_CAF1
Location 3,550,895 – 3,550,989
Length 94
Max. P 0.684017
window1957

overview

Window 7

Location 3,550,895 – 3,550,989
Length 94
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 80.35
Mean single sequence MFE -24.60
Consensus MFE -14.60
Energy contribution -14.84
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.90
Structure conservation index 0.59
SVM decision value 0.31
SVM RNA-class probability 0.684017
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3550895 94 - 23771897
AAUGCCAACGUGUGGCAGCUUGUGAUAGCAGUACAGAAAACUCCCAAAAAGGGGGUUGCUAUUUACAACACUGGGAAA-AUAAGUGGGAA-AUG-AU------
..(((((.....)))))..(((((((((((.........((((((.....))))))))))).))))))((((......-...))))....-...-..------ ( -25.70)
>DroSec_CAF1 80879 95 - 1
AAUGCCAACGUGUGGCAGCUUGUGAUAGCAGCGAAGAAAUCUCCCAAAAAGGGGGUUGCUAUUUACAACACUGGGAAAAAUAAGUGGGAA-GUG-CU------
..(((((.....)))))(((((((((((((((((.....))((((.....))))))))))).))))))((((..........))))....-..)-).------ ( -27.70)
>DroSim_CAF1 86192 84 - 1
AAUGCCAACGUGUGGCAGCUUGUGAUAGCAGCGAAGAAAACUCCCAAAAAGAGGGUUGCUAUUUACAACACUGGGAAAAAUAAU-------------------
..(((((.....)))))(.(((((((((((((...((....))((.......))))))))).)))))))...............------------------- ( -19.20)
>DroEre_CAF1 99177 102 - 1
AAUGCCAACGUGUGGCAGCUUGUGAUAGCAGCACAGAAAACUGCCAAAUAGAGGGUUGCU-UGUCGUGCACCGUGGAAAAUAAAUGGGAAAAUGGAAAUAAAU
..(((((.....)))))((...((((((((((.(((....)))((.......))))))).-))))).)).((((.........))))................ ( -22.90)
>DroYak_CAF1 84295 95 - 1
AAUGCCAACGUGUGGCAGCUUGUGAUAGCAGCACAGGGAACUCCCAAAAAGAGGGUUGCUAUGUCGUGCACUGGGGAAAAUAACUGGCAA-GUG-AA------
..((((.(((((((((((((((((.......))).(((....))).......))))))))))).)))......((........)))))).-...-..------ ( -27.50)
>consensus
AAUGCCAACGUGUGGCAGCUUGUGAUAGCAGCACAGAAAACUCCCAAAAAGAGGGUUGCUAUUUACAACACUGGGAAAAAUAAGUGGGAA_AUG_AA______
..(((((.....))))).((.(((((((((((..((....)).((.......))))))))))......))).))............................. (-14.60 = -14.84 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:03 2006