Locus 1246

Sequence ID 3L_DroMel_CAF1
Location 3,541,857 – 3,541,949
Length 92
Max. P 0.998570
window1954

overview

Window 4

Location 3,541,857 – 3,541,949
Length 92
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 64.35
Mean single sequence MFE -21.03
Consensus MFE -11.49
Energy contribution -11.50
Covariance contribution 0.01
Combinations/Pair 1.25
Mean z-score -2.11
Structure conservation index 0.55
SVM decision value 3.14
SVM RNA-class probability 0.998570
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3541857 92 - 23771897
AACCAGACGAGCUGGCGGCAAACUUGCCAGUUACACUGAUAAAUAUUUAUUUAAAUGAUUCUGUAU-----UAUAUAAUCAAAUUAAAUGUAAGCUC-----------
...(((...(((((((((.....)))))))))...)))....(((((((.((...(((((.(((..-----.))).))))))).)))))))......----------- ( -18.10)
>DroSec_CAF1 72035 96 - 1
AGCCAGACGAACUGGCGGCAAGCUUGCUAGUUACACUGAUAAAUAUUUAUUUAAAUAACUU----------UGUAUAAUCAAAUUAAUGGUAAGCUCGAUAUUAUG--
.(((((.....)))))..(.(((((((((((((....(((((....)))))....))))((----------((......))))....))))))))).)........-- ( -21.90)
>DroYak_CAF1 75127 105 - 1
AACCAGACGAGCUGGCGGCAAGCCUCCCAGUUACACUAAAAAAUAUUUCUAUAGCA--AGCUAUACAAUUUGUUAAAUUAA-UUUAUAGCUUUGCUAGAUAUUAGCUU
....((...((((((.((....))..))))))...))....((((((....(((((--(((((((.((((.........))-)))))))).))))))))))))..... ( -23.10)
>consensus
AACCAGACGAGCUGGCGGCAAGCUUGCCAGUUACACUGAUAAAUAUUUAUUUAAAU_AAUCU_UA______UAUAUAAUCAAAUUAAAGGUAAGCUCGAUAUUA____
...(((...(((((((((.....)))))))))...)))...................................................................... (-11.49 = -11.50 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:00 2006