Locus 1245

Sequence ID 3L_DroMel_CAF1
Location 3,540,665 – 3,540,757
Length 92
Max. P 0.684147
window1953

overview

Window 3

Location 3,540,665 – 3,540,757
Length 92
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.98
Mean single sequence MFE -28.13
Consensus MFE -14.78
Energy contribution -14.62
Covariance contribution -0.16
Combinations/Pair 1.33
Mean z-score -1.84
Structure conservation index 0.53
SVM decision value 0.31
SVM RNA-class probability 0.684147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3540665 92 - 23771897
UCUUCCGCUAUAUGGAUUUU-GCGCUGGCAACAUGUAUGAGU---ACUUU----CUCAUAUAACUUAUUUAAUAGUGCAACAUUUAGUGGGAGG-----UG-----------GGGG
((((((((((.(((....((-((((((....).((((((((.---.....----))))))))...........)))))))))).))))))))))-----..-----------.... ( -32.00)
>DroSec_CAF1 70853 92 - 1
UCUUCCGGUUUAUGGAUUUU-GCGCUGGCAACAUGUAUGAGU---AUUUU----CUCAUAUAACUUAUUUAAUAGUGCAACAUUUAGUGGGGGG-----GU-----------GGGG
(((((((.(..(((....((-((((((....).((((((((.---.....----))))))))...........))))))))))..).)))))))-----..-----------.... ( -26.30)
>DroSim_CAF1 72003 92 - 1
UCUUCCGGUUUAUGGAUUUU-GCGCUGGCAACAUGUAUGAGU---AUUUU----CUCAUAUAACUUAUUUAAUAGUGCAACAUUUAGUGGGGGG-----UG-----------GGGG
.((((((.(((.(((((.((-((((((....).((((((((.---.....----))))))))...........))))))).)))))....))).-----))-----------)))) ( -27.30)
>DroEre_CAF1 88903 108 - 1
UCUUCCGGUUUAUGGAUUUU-GCGCUGGCAACUUGUAUGAGU---AUUUU----CUCAUAUAACUUAUUUAAUAGUGCAACAUUCAGUGAGUGUGAGGGUGACGGUGGGGGUGGGG
.((((((.....(((((.((-((((((....)(((((((((.---.....----)))))))))..........))))))).)))))...........(....)..))))))..... ( -29.00)
>DroYak_CAF1 73873 106 - 1
UCUUCCGGUUUAUGGAUUUU-GCGCUGGCAACAUGUAUGAGUGCGAGUUU----CUCAUAUAACUUAUUUAAUAGUGCAACAUUUAGUGGGGGU-----UGGGGGUGGGGGUACGG
.(((((((..(.(((((.((-((((((....).((((((((.........----))))))))...........))))))).)))))....)..)-----))))))........... ( -27.10)
>DroAna_CAF1 82753 114 - 1
UCUUUCGGUUUAUGGAUUCUGGCGCUGGAAAUAAAUACAUGUACUAUUUUACGGUUUAUAUUACGUAUUUAAUAGUGCAGCAAUGAGUCGAGUGGAGGGCAAGGAUUG--GUGGGG
(((.((((((..((..(((...((((.((..........(((((((((.((((..........))))...)))))))))........)).)))))))..))..)))))--).))). ( -27.07)
>consensus
UCUUCCGGUUUAUGGAUUUU_GCGCUGGCAACAUGUAUGAGU___AUUUU____CUCAUAUAACUUAUUUAAUAGUGCAACAUUUAGUGGGGGG_____UG___________GGGG
.((((((.(..(((.......((((((....).((((((((.............))))))))...........)))))..)))..).))))))....................... (-14.78 = -14.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:59 2006