Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,537,631 – 3,537,731 |
Length | 100 |
Max. P | 0.724969 |
Location | 3,537,631 – 3,537,731 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -23.52 |
Energy contribution | -23.76 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.80 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.581025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3537631 100 + 23771897 UUUGUGUGUUUUGCGAUCUAGUCAGGGGCGUAGUCAAAGAUACGGCGGUGGCAAAUGUAAAAUAUAGUUUGAGUGCCACAGGUAAGCCCCUGAAUAUCUU ..............(((....((((((((...(((........))).((((((....((((......))))..))))))......))))))))..))).. ( -31.00) >DroSec_CAF1 67796 100 + 1 UUUGUGUGUUUUGCGAUCUAGUCAGGGGCGUAGUCAAAGAUACGGCGGUGGCAAAUGUAAAAUAAAGUUUGAGUGCCACAGGUAAGCCCCUGAAUAUCUG ..............(((....((((((((...(((........))).((((((....((((......))))..))))))......))))))))..))).. ( -31.00) >DroSim_CAF1 68927 100 + 1 UUUGUGUGUUUUGCGAUCUAGUCAGGGGCGUAGUCAAAGAUACGGCGGUGGCAAAUGUAAAAUAUAGUUUGAGUGCCACAGGUAAGCCGCUGAAUAUCUG ..............(((....((((.(((...(((........))).((((((....((((......))))..))))))......))).))))..))).. ( -26.10) >DroEre_CAF1 85830 100 + 1 UUUGUGUGUUUUGCAAGCUAGUCAGGGGCGUAGUCAAAGAAACAGCGGCGCCAAAUGUAAAAUAUAGUUUGAUUGCCACACGUAAGCCCCUGACCAUCUG ((((((.....))))))...(((((((((((.((.......)).))((((.(((((..........)))))..))))........)))))))))...... ( -28.30) >DroYak_CAF1 70801 100 + 1 UUUGUGUGCUUUGCCAGCUAGUCAGGGGCGUAGUCAAAGAAACGGCGGCGCCAAAUGUAAAAUAUAGUUUGAUUGCCACAGGUAGGCCCCUGAACAUCUG ...(((((((.....)))...((((((((.(((((........)))((((.(((((..........)))))..)))).....)).))))))))))))... ( -29.70) >consensus UUUGUGUGUUUUGCGAUCUAGUCAGGGGCGUAGUCAAAGAUACGGCGGUGGCAAAUGUAAAAUAUAGUUUGAGUGCCACAGGUAAGCCCCUGAAUAUCUG .(((((.....))))).....((((((((...(((........)))((((.(((((..........)))))..))))........))))))))....... (-23.52 = -23.76 + 0.24)
Location | 3,537,631 – 3,537,731 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -18.51 |
Energy contribution | -19.03 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.11 |
Mean z-score | -2.48 |
Structure conservation index | 0.72 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3537631 100 - 23771897 AAGAUAUUCAGGGGCUUACCUGUGGCACUCAAACUAUAUUUUACAUUUGCCACCGCCGUAUCUUUGACUACGCCCCUGACUAGAUCGCAAAACACACAAA ..(((..((((((((......((((((....................))))))....(((........)))))))))))....))).............. ( -25.95) >DroSec_CAF1 67796 100 - 1 CAGAUAUUCAGGGGCUUACCUGUGGCACUCAAACUUUAUUUUACAUUUGCCACCGCCGUAUCUUUGACUACGCCCCUGACUAGAUCGCAAAACACACAAA ..(((..((((((((......((((((....................))))))....(((........)))))))))))....))).............. ( -25.95) >DroSim_CAF1 68927 100 - 1 CAGAUAUUCAGCGGCUUACCUGUGGCACUCAAACUAUAUUUUACAUUUGCCACCGCCGUAUCUUUGACUACGCCCCUGACUAGAUCGCAAAACACACAAA ..(((..((((.(((......((((((....................))))))....(((........)))))).))))....))).............. ( -18.85) >DroEre_CAF1 85830 100 - 1 CAGAUGGUCAGGGGCUUACGUGUGGCAAUCAAACUAUAUUUUACAUUUGGCGCCGCUGUUUCUUUGACUACGCCCCUGACUAGCUUGCAAAACACACAAA (((.(((((((((((......(((((..(((((............))))).))))).(((.....)))...)))))))))))..)))............. ( -30.50) >DroYak_CAF1 70801 100 - 1 CAGAUGUUCAGGGGCCUACCUGUGGCAAUCAAACUAUAUUUUACAUUUGGCGCCGCCGUUUCUUUGACUACGCCCCUGACUAGCUGGCAAAGCACACAAA (((.((.((((((((......(((((..(((((............))))).))))).(((.....)))...)))))))).)).))).............. ( -27.40) >consensus CAGAUAUUCAGGGGCUUACCUGUGGCACUCAAACUAUAUUUUACAUUUGCCACCGCCGUAUCUUUGACUACGCCCCUGACUAGAUCGCAAAACACACAAA ....((.((((((((......((((((....................))))))....(((........))))))))))).)).................. (-18.51 = -19.03 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:56 2006