Locus 1242

Sequence ID 3L_DroMel_CAF1
Location 3,534,864 – 3,534,958
Length 94
Max. P 0.578982
window1947

overview

Window 7

Location 3,534,864 – 3,534,958
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 91.76
Mean single sequence MFE -22.91
Consensus MFE -18.97
Energy contribution -19.47
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.83
SVM decision value 0.09
SVM RNA-class probability 0.578982
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3534864 94 - 23771897
AAAACUGCAACUCAAUUACGGGGGCCAUUGGAGUCAUAACUAUAAGCUGUUGUUGACUUCUAAAAUGGCUAUUCAAAAACAUAACCCGAG--GGCU
..................((((((((((((((((((((((........)))).)))))))...)))))))..............))))..--.... ( -23.73)
>DroSec_CAF1 65017 94 - 1
AAAACUGCAACUCAAUUACGGGGGCCAUUGGAGUCAUAACUAUAAGCUGUUGUUGACUUCUAAAAUGGCUAUUCAAAAACAUAACCCGAC--GGCU
..................((((((((((((((((((((((........)))).)))))))...)))))))..............))))..--.... ( -23.73)
>DroSim_CAF1 66094 94 - 1
AAAUCUGCAACUCAAUUACGGGGGCCAUUGGAGUCAUAACUAUAAGCUGUUGUUGACUUCUAAAAUGGCUAUUCAAAAACAUAACCCGAC--GGCU
..................((((((((((((((((((((((........)))).)))))))...)))))))..............))))..--.... ( -23.73)
>DroEre_CAF1 82956 93 - 1
CA-ACUGCAACUCAAUUAUGGGGGCCAUUGGAGUCAUAACUAUAAGCUGUUGUUGACUUCUAAAAUGGCUAUUCAAAAACAUAACCCGAG--GGCU
..-...((..(((..(((((..((((((((((((((((((........)))).)))))))...))))))).........)))))...)))--.)). ( -24.60)
>DroYak_CAF1 67915 94 - 1
CAAACUGCAACUCAAUUACUGGGGCCAUUGGAGUCAUAACUGUAAGCUGUUGUUGACUUCUAAAAUGGCAAUUCAAAAACAUAACCCGAG--GGCU
......((..((((.....))))(((((((((((((((((........)))).)))))))...)))))).....................--.)). ( -22.60)
>DroAna_CAF1 77834 96 - 1
GUGACUGCAACUCAAUUACAGGGGCCAUCAGAGUCAUAACUAUAAGCUGUUGUUGACUUCUAAAAUGGCUAUUCAAAAUCAUAACACUGGCCAGAC
(((.(((...........))).((((((.(((((((((((........)))).)))).)))...))))))..............)))......... ( -19.10)
>consensus
AAAACUGCAACUCAAUUACGGGGGCCAUUGGAGUCAUAACUAUAAGCUGUUGUUGACUUCUAAAAUGGCUAUUCAAAAACAUAACCCGAG__GGCU
......((..(((.......)))(((((((((((((((((........)))).)))))))...))))))........................)). (-18.97 = -19.47 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:54 2006