Locus 1240

Sequence ID 3L_DroMel_CAF1
Location 3,529,611 – 3,529,721
Length 110
Max. P 0.602924
window1942

overview

Window 2

Location 3,529,611 – 3,529,721
Length 110
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 86.39
Mean single sequence MFE -21.03
Consensus MFE -16.05
Energy contribution -16.42
Covariance contribution 0.36
Combinations/Pair 1.13
Mean z-score -2.36
Structure conservation index 0.76
SVM decision value 0.14
SVM RNA-class probability 0.602924
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3529611 110 + 23771897
GCCGAAUUAAUCAGUCAGCCCACUAAAAUUAACAACAAUAAUUUUGGUGCCGGUGCGUAUAUACACAUCAUAAAUAAUCCACAUAACAUGACUGUAUCUUUUUUGUUUGA
..((((.....((((((...(((((((((((.......)))))))))))..((((.((....)).))))...................)))))).......))))..... ( -21.40)
>DroSec_CAF1 59917 109 + 1
GCCGAAUUGAUCAGUCAGCCCACUAAAAUUAACAACAAUAAUUUUGGUGCCGGUGCGUAUAUACACAUCAUAAAUAAUCCACAUAACAUGACUGUAUCUU-UUUGUUUGA
..((((..(((((((((...(((((((((((.......)))))))))))..((((.((....)).))))...................)))))).)))..-))))..... ( -26.40)
>DroEre_CAF1 77669 109 + 1
GCCGAAUUAAUCAGUCAGCCCACUAAAAUUAACAACAAUAAUUUUGGUGCCGGUGCGUAUAUACACAUCAUAAAUAAUCCACAUAACAUGACUGUAUCUU-UUUGUUUGA
..((((.....((((((...(((((((((((.......)))))))))))..((((.((....)).))))...................))))))......-))))..... ( -22.00)
>DroWil_CAF1 101689 91 + 1
GCCGAAUUAAUAAAUCAACCAACUAAAAUUAACAACAACAAUUUUGGUGCCGGUGCGUAUAAACA--UUA-AAAUUAUGUACAUAGUUUAAUUU----------------
...((((((............(((((((((.........)))))))))....(((((((......--...-....))))))).)))))).....---------------- ( -12.22)
>DroYak_CAF1 62610 109 + 1
GCCGAAUUAAUCAGUCAGCCCACUAAAAUUAACAACAAUAAUUUUGGUGCCGGUGCGUAUAUACACAUCAUAAAUAAUCCACAUAACAUGACUGUAUCUU-UUUGUUUGA
..((((.....((((((...(((((((((((.......)))))))))))..((((.((....)).))))...................))))))......-))))..... ( -22.00)
>DroAna_CAF1 73869 107 + 1
GCCGAACUAAUCAGUCAGCCCACUAAAAUUAACAACAAUAAUUUUGGUGCCGGUGCGUAUAUACACAUCAUAAAUAAUCCCCCCAUC-UGACUACA-CUU-AUUGUUUGA
..(((((.....((((((..(((((((((((.......)))))))))))..((((.((....)).)))).................)-)))))...-...-...))))). ( -22.14)
>consensus
GCCGAAUUAAUCAGUCAGCCCACUAAAAUUAACAACAAUAAUUUUGGUGCCGGUGCGUAUAUACACAUCAUAAAUAAUCCACAUAACAUGACUGUAUCUU_UUUGUUUGA
...........((((((...(((((((((((.......)))))))))))..((((.((....)).))))...................))))))................ (-16.05 = -16.42 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:49 2006