Locus 124

Sequence ID 3L_DroMel_CAF1
Location 405,950 – 406,040
Length 90
Max. P 0.542362
window176

overview

Window 6

Location 405,950 – 406,040
Length 90
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 82.21
Mean single sequence MFE -21.62
Consensus MFE -12.84
Energy contribution -13.12
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.59
SVM decision value 0.02
SVM RNA-class probability 0.542362
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 405950 90 + 23771897
-CAUAUUGAAGUUGGCUGUAAAUCAUGAUUAUCUUUUUAUUGCUGACAUU-UGUGGGGUCUCU-AUAUGAACUCCG------------CUUUCCACCCUCCUCGA-------------
-....((((.((..((.(((((.............))))).))..))...-.(((((((.((.-....))))))))------------)............))))------------- ( -19.52)
>DroSim_CAF1 55024 90 + 1
-CAUAUUGAAGUUGGCUGUAAAUCAUGAUUAUCUUUUUAUUGCUGACAUU-UGCGGGGUCUCU-AUAUGAACUCCG------------CUUUCCACCCUCCUCGA-------------
-....((((.((..((.(((((.............))))).))..))...-.(((((((.((.-....))))))))------------)............))))------------- ( -21.42)
>DroEre_CAF1 57310 90 + 1
-CAUAUUGAAGUUGGCUGUAAAUCAUGAUUAUCUUUUUAUUGCUGACAUU-UGCGGGGUCUCU-AUAUGAACUCCG------------CUUUCCACCCUCCUCCA-------------
-.........((..((.(((((.............))))).))..))...-.(((((((.((.-....))))))))------------)................------------- ( -20.72)
>DroWil_CAF1 67455 118 + 1
CAAUAUUGAAGUUGGCGGUAAAUCAUGAUUAUCUUUUUAUUGCUGACAUUUUGCGGGGCGACUUUUAUGAACCAUCCCAUCAUACACUCCCCCCACACUCUUCGACAAUGUCAGCUAU
..((((((..((..((((((((.............))))))))..))....((.((((.((....(((((.........)))))...)).)))).))........))))))....... ( -26.32)
>DroYak_CAF1 57255 90 + 1
-CAUAUUGAAGUUGGCUGUAAAUCAUGAUUAUCUUUUUAUUGCUGACAUU-UGCGGGGUCUCU-AUAUGAACUCCG------------CUUUCCACCCUCCUCGA-------------
-....((((.((..((.(((((.............))))).))..))...-.(((((((.((.-....))))))))------------)............))))------------- ( -21.42)
>DroAna_CAF1 47018 90 + 1
-CAUAUUGAAGUUGGCUGUAAAUCAUGAUUAUCUUUUUAUUGCCGACAUU-UGCGGGGUCUCU-AUAUGAACUCAA------------CGUUCCACCCCCUAUGU-------------
-((((.....((((((.(((((.............))))).))))))...-...(((((....-....((((....------------.)))).))))).)))).------------- ( -20.32)
>consensus
_CAUAUUGAAGUUGGCUGUAAAUCAUGAUUAUCUUUUUAUUGCUGACAUU_UGCGGGGUCUCU_AUAUGAACUCCG____________CUUUCCACCCUCCUCGA_____________
..........((((((.(((((.............))))).)))))).......(((((.((......)))))))........................................... (-12.84 = -13.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:05 2006