Locus 1237

Sequence ID	3L_DroMel_CAF1
Location	3,521,949 – 3,522,041
Length	92
Max. P	0.827391

overview

Window 9

Location	3,521,949 – 3,522,041
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	85.84
Mean single sequence MFE	-23.46
Consensus MFE	-18.18
Energy contribution	-19.26
Covariance contribution	1.08
Combinations/Pair	1.04
Mean z-score	-1.90
Structure conservation index	0.77
SVM decision value	0.70
SVM RNA-class probability	0.827391
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3521949 92 - 23771897
GCAGCACUGCAGUUGGCUAUUUAUUUAUUUGGCUUUUUGUUCGUUCUUUCAGCUCGGCUAACACAAAACUUGGCUGAGUGCAGAAAAUGUGU
...((((.((((..(((((..........)))))..))))...((((....((((((((((........))))))))))..))))...)))) ( -25.70)
>DroSec_CAF1 52318 92 - 1
GCAGCACUGCAGUUGGCUAUUUAUUUAUUUGGCUUUUUGUUCGUUCUUUCAGCUCGGCUAACACAAAACUUGGCUGAGUGCAGAAAAUGUGU
...((((.((((..(((((..........)))))..))))...((((....((((((((((........))))))))))..))))...)))) ( -25.70)
>DroSim_CAF1 53016 92 - 1
GCAGCACUGCAGUUGGCUAUUUAUUUAUUUGGCUUUUUGUUCGUUCUUUCAGCUCGGCUAACACAAAACUUGGCUGAGUGCAGAAAAUGUGU
...((((.((((..(((((..........)))))..))))...((((....((((((((((........))))))))))..))))...)))) ( -25.70)
>DroEre_CAF1 68616 76 - 1
GCAGAACUGCAGUUG----------------GCUUUUUGUUCGUUCUUUCAGCUCGGCUAACACAAAACUUGGCCGAGUGCAAAAAAUAUAU
(((((((.((((...----------------.....))))..)))))....((((((((((........))))))))))))........... ( -23.10)
>DroYak_CAF1 54756 76 - 1
GCAGAACUGCAGUUG----------------CCUUUUUGUUCGUUCUUUCAGCUCAGCUAACACAAAACUUGGCCGAGUGCAGAAAAUGUGU
(((...(((((.(((----------------((.((((((..(((.....(((...))))))))))))...)).))).)))))....))).. ( -17.10)
>consensus
GCAGCACUGCAGUUGGCUAUUUAUUUAUUUGGCUUUUUGUUCGUUCUUUCAGCUCGGCUAACACAAAACUUGGCUGAGUGCAGAAAAUGUGU
((((.((.((((..(((((..........)))))..))))..)).))....((((((((((........))))))))))))........... (-18.18 = -19.26 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:46 2006