| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,515,128 – 3,515,228 |
| Length | 100 |
| Max. P | 0.743876 |
| Location | 3,515,128 – 3,515,228 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 80.98 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -11.84 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3515128 100 - 23771897 AUCCAACUUGUGACACUUUCAUUGUGUAAAAUGUCCUGCAAAGGAGUAAAGCGAAAGCGAAUGCACUGAGAAAAA-AGGAUUUUAAACAAGGAUCUACAAA .......((((.....(((((..(((((.....((((....)))).....((....))...))))))))))....-.(((((((.....))))))))))). ( -21.10) >DroSec_CAF1 45694 101 - 1 AACCAACUUGUGACACUUUCAUUGUGUAAAAUGUCCUGCAAAGGAGUAAAGCGAAAGCGAAUGCACUGAGAGAAAAAGGAUUUUAAAAAAGCAUCUACAAG ......(((((....((((((..(((((.....((((....)))).....((....))...))))))))))).....(((((((....))).))))))))) ( -23.20) >DroSim_CAF1 46308 101 - 1 AACCAACUUGUGACACUUUCAUUGUGUAAAAUGUCCUGCAAAGGAGUAAAGCGAAAGCGAGUGCACUGAGAAAAAAUGUAUUUUACACAAGCAUGUACAAA .......(((((.((......((((((((((((((((....))))(((..((....))...)))..............))))))))))))...))))))). ( -26.20) >DroEre_CAF1 61781 100 - 1 AUCCAACUUGUGACACUUUCAUUGUGUAAAAUGUCCUGCAAAGGAGUAAAGCGAAAGCGACUAUACAGAGAAAAA-AGUAUUUUAAACAAGCACUUACAAA ......(((((.((..((((.(((((((.....((((....))))((...((....)).))))))))).))))..-.)).......))))).......... ( -19.90) >DroYak_CAF1 47863 100 - 1 AUCCAACUUGUGACACUUUCAUUGUGUAAAAUGUCCUGCAAAGGAGUAAAGCGAAAGCGAGUGUACAGCGAAAAA-AGCACUUUAAACAAGGAAUUAAAAA .(((....((((.(((((.((((......))))((((....)))).....((....)))))))))))((......-.))...........)))........ ( -22.10) >DroAna_CAF1 59458 86 - 1 AUCCAACUUGUGACACUUUCAUUGUG-AGGGUGUCCUGCAAAGGAGCAGGAC-ACGGCGAGUAAAAUGUCAAA---GUUACUUGACUUCAG---------- .....((((((..(((.......)))-...(((((((((......)))))))-)).)))))).....(((((.---.....))))).....---------- ( -29.50) >consensus AUCCAACUUGUGACACUUUCAUUGUGUAAAAUGUCCUGCAAAGGAGUAAAGCGAAAGCGAGUGCACUGAGAAAAA_AGUAUUUUAAACAAGCAUCUACAAA ......(((((.((((.......))))((((((((((....)))).....((....))....................))))))..))))).......... (-11.84 = -12.65 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:45 2006