Locus 1234

Sequence ID 3L_DroMel_CAF1
Location 3,511,996 – 3,512,098
Length 102
Max. P 0.716209
window1936

overview

Window 6

Location 3,511,996 – 3,512,098
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.23
Mean single sequence MFE -28.68
Consensus MFE -22.56
Energy contribution -24.04
Covariance contribution 1.48
Combinations/Pair 1.03
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.39
SVM RNA-class probability 0.716209
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3511996 102 + 23771897
GUGGUUUCGUGCAUGCAUAUUGCAUUUUGAGCGCAAAUCCUAAUGACCGGGAAAUAGUAAUCCCUAUUGGGAUGAAUGCCAAGAAUCGAAAUUUAAACAC-GC
(((((((((((((.......))))(((((.(((...(((((((((...((((........)))))))))))))...))))))))..)))))).....)))-.. ( -29.10)
>DroSec_CAF1 42554 103 + 1
GUGGUUUCGUGAUUGCAUAUUGCAUUUUGAGCGCAAAUCCUAAUGACCGGGAAAUAGUAUUCCCCAUUGGGUUGAGUGCCAAGAAUCGAAAUUUAAGCACGGC
(((((((((....(((.....)))(((((.((((....(((((((...(((((......))))))))))))....)))))))))..)))))).....)))... ( -30.40)
>DroSim_CAF1 43085 103 + 1
GUGGUUUCGUGCAUGCAUAUUGCAUUUUGAGCGCAAAUCCUAAUGACCGGGAAAUAGUAAUCCCUAUUGGGAUGAGAGCCAAGAAUCGAAAUUUAAGCACGGC
......((((((.(((.....)))(((((.((....(((((((((...((((........)))))))))))))....)))))))............)))))). ( -31.70)
>DroEre_CAF1 58615 103 + 1
GUGGUUUCGGGCAUGCAUAUUGCAUUUUGAGCGCAAAUCCUAAUGACCGGGAAAUAGUAAUCCCACUUGGGAUGAAUGCCAAGAAUCGCCAUUUAAGCACCGC
(((.((...(((.(((.....)))(((((.(((...(((((((.(...((((........)))).))))))))...))))))))...)))....)).)))... ( -29.20)
>DroYak_CAF1 44485 103 + 1
GUGGUUUCGUGAAUGCAUAUUGCAUUUUUAGCGCAAAUCCCAAUGGCCGGGAAAUAGUAAUCCCUAUUAGGAUGAAUGCCAAGAAUCGAAAUUUAAACACGGC
(((((((((.((((((.....))))))...(.(((.((((.((((...((((........)))))))).))))...))))......)))))).....)))... ( -23.00)
>consensus
GUGGUUUCGUGCAUGCAUAUUGCAUUUUGAGCGCAAAUCCUAAUGACCGGGAAAUAGUAAUCCCUAUUGGGAUGAAUGCCAAGAAUCGAAAUUUAAGCACGGC
(((((((((....(((.....)))(((((.(((...(((((((((...((((........)))))))))))))...))))))))..)))))).....)))... (-22.56 = -24.04 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:44 2006