Locus 1233

Sequence ID 3L_DroMel_CAF1
Location 3,508,764 – 3,508,870
Length 106
Max. P 0.895597
window1935

overview

Window 5

Location 3,508,764 – 3,508,870
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.36
Mean single sequence MFE -21.10
Consensus MFE -18.54
Energy contribution -18.30
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.99
SVM RNA-class probability 0.895597
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3508764 106 + 23771897
AUUCAACAAUUCACACUCUGCUGGCGCCACUUUGUAAUUACCUUAUAGUAAUUCUCCAAGGAAGCCUUUUCAGUGUACAGUGACAAUUGAGUGCUCCACAUUCAUU
..........((((((.(((..(((....(((((.((((((......))))))...)))))..)))....))).))...))))....((((((.....)))))).. ( -21.10)
>DroSec_CAF1 39293 106 + 1
AUUCAACAAUCCACACUCCGUUGGCGCCACUCUGUAAUUACCUUAUAGUAAUUCUCCAAGGAAGCCUUUUCAGUGUACACUGACAAUUGAGUGCUCCACAUUCAUC
.............(((((.((((((.((.....(.((((((......))))))).....))..)))...(((((....))))).))).)))))............. ( -19.70)
>DroSim_CAF1 39785 106 + 1
AUUCAACAAUCCACACUCUGCUGGCGCCACUCUGUAAUUACCUUAUAGUAAUUCUCCAAGGUAGCCUUUUCAGUGUACACUGACAAUUGAGUGCUCCACAUUCAUU
..................((.(((.((.((((.....(((((((..((.....))..))))))).....(((((....))))).....)))))).)))))...... ( -21.90)
>DroEre_CAF1 55369 105 + 1
AUU-GAGAAUCCACGCUGCUCUGGCGCCACUUUGUAAUUACCUUAUAGUAAUUCUCUAAGGAAGCCUUUUCAGUGUACACUGACAAUUGAGUGCUCCACAUUCAUU
...-(((.....((((((....(((....(((.(.((((((......))))))..).)))...)))....)))))).((((........))))))).......... ( -21.60)
>DroYak_CAF1 41202 106 + 1
AUUUAAGAAUCCACGCUGCUCUGGUGCCACUUUGUAAUUACCUUGUAGUAAUUCUCUAAGGAAGCCUUUUCAGUGUACACUGACAAUUGAGUGCUCCACAUUCAUU
......((((....(((((...((((............))))..)))))..........(((.(((((.(((((....))))).....))).)))))..))))... ( -21.20)
>consensus
AUUCAACAAUCCACACUCCGCUGGCGCCACUUUGUAAUUACCUUAUAGUAAUUCUCCAAGGAAGCCUUUUCAGUGUACACUGACAAUUGAGUGCUCCACAUUCAUU
............(((((.....(((....(((((.((((((......))))))...)))))..))).....)))))...........((((((.....)))))).. (-18.54 = -18.30 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006