Locus 1230

Sequence ID 3L_DroMel_CAF1
Location 3,486,711 – 3,486,809
Length 98
Max. P 0.570694
window1931

overview

Window 1

Location 3,486,711 – 3,486,809
Length 98
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.43
Mean single sequence MFE -20.43
Consensus MFE -12.90
Energy contribution -13.99
Covariance contribution 1.09
Combinations/Pair 1.15
Mean z-score -1.42
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.570694
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3486711 98 + 23771897
CGAACGUAAAAUGCAAGCGGCGUCAUUUCGCAGUUCCUUGCGAGGCUC-------ACUCGUAGUUU-------CCC--AUUUUCCCCGCCGCUUUUCCUUGUUUUUUUCUAUGC
.(((((........((((((((.....((((((....))))))((...-------((.....))..-------.))--........)))))))).....))))).......... ( -21.82)
>DroSec_CAF1 17304 94 + 1
UGAACGUAAAAUGCAAGCAGCGUCAUUUCGCAGUUCCUUUCGAGGCUC-------ACUCGUAUUUU-------CCC--AUU-UCCUCGCCGCUUUUCCUUGUUUUU---CUUGC
.(((((..(((.((..((.(((......))).........((((....-------.))))......-------...--...-.....)).)).)))...)))))..---..... ( -13.40)
>DroSim_CAF1 17698 95 + 1
UGAACGUAAAAUGCAAGCGGCGUCAUUUCGCAGUUCCUUGCGAGGCUC-------ACUCGUAUUUU-------CCC--AUUUUCCCCGCCGCUUUUCCUUGUUUUC---CCUGC
.(((..(((.....((((((((.......((((....))))(((....-------.))).......-------...--........))))))))....)))..)))---..... ( -21.00)
>DroEre_CAF1 33041 95 + 1
UAAACGUAAAAUGCAAGCGGCGUCAUUUCGCAGUUCCUUGCGAGUCUC-------ACUCGUAUUUU-------CCU--ACUUUUCCCGCCGCUUUGCCUUGUUUU---CUGUAC
...(((.(((((((((((((((....(((((((....)))))))....-------....(((....-------..)--))......)))))).))))...)))))---.))).. ( -25.10)
>DroYak_CAF1 18388 98 + 1
UGAACGUAAAAUGCAAGCGGCGUCAUUUCGCAGUUCCUUGCGAGGCUC-------ACUCGUAUUUU-------CCUCUAC-UUUCCCGCCGCUUUUCCUUGUUCUC-UCUCUAC
.(((((........((((((((...((((((((....))))))))...-------....(((....-------....)))-.....)))))))).....)))))..-....... ( -24.02)
>DroAna_CAF1 29312 111 + 1
UGAACAUAAAAUGCAAGCGGCGGCAUUUUGCAGUUCCUUGCCAGGCACUUGCUUUUCUUAUAUUUUUUAUUUUUCA--CUCUUCCUCAGACAUUUUCCUUGUAUUA-UUUGUGC
....((((((..(((((.(.(((((.............)))).).).)))))........................--...........(((.......)))....-)))))). ( -17.22)
>consensus
UGAACGUAAAAUGCAAGCGGCGUCAUUUCGCAGUUCCUUGCGAGGCUC_______ACUCGUAUUUU_______CCC__AUUUUCCCCGCCGCUUUUCCUUGUUUUC__CUCUGC
.(((((........((((((((.......((((....))))(((............)))...........................)))))))).....))))).......... (-12.90 = -13.99 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:39 2006