Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,483,628 – 3,483,728 |
Length | 100 |
Max. P | 0.788703 |
Location | 3,483,628 – 3,483,728 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -22.52 |
Energy contribution | -22.36 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.06 |
Structure conservation index | 0.64 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3483628 100 + 23771897 GUCUAUCUGCCAGCUGGUCCAUUCGCCCACUUGGUGGUGCAGUCAACCCGCAGUGGGUGGUGCUGCACUCC---------ACCCACCGAGACCCUGCACCACUGCUCCA-- ...........(((.(((......))).....((((((((((....(.((..((((((((.(.....).))---------)))))))).)...)))))))))))))...-- ( -36.20) >DroSec_CAF1 14229 90 + 1 GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGUGCUGCACUCC---------ACCCACUGUGCCUC--------UGUAC---- ..........(((..((..((.(((((.....))))))).........((((((((((((.(.....).))---------)))))))))))).)--------))...---- ( -33.10) >DroSim_CAF1 14642 98 + 1 GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGUGCUGCACUCC---------ACCCACUGUGCCCCUGCACCACUGUAC---- ........(((((.(((.(.....).))).)))))((((((.......((((((((((((.(.....).))---------))))))))))....)))))).......---- ( -39.90) >DroEre_CAF1 29938 99 + 1 GUCUAUC---CAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGCGCUGCACUCC---------GCCCACUGAAGCCCUCCACCCCUCCACCCAG .......---...((((..((.(((((.....)))))))...........((((((((((.(.....).))---------))))))))...................)))) ( -30.00) >DroYak_CAF1 15148 111 + 1 GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAGUCAACCCGCAGUGGGUGGUGCUGCACUCCACCCGCUCCACCCACUGUACCCCUCCACCUCCCCCCCCUG ........(((((.(((.(.....).))).)))))((((.((.......(((((((((((.((............)).)))))))))))....)).))))........... ( -36.10) >consensus GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGUGCUGCACUCC_________ACCCACUGUGCCCCUCCACCACUGCACC___ ............((.(((....(((((((((..((((.(.......)))))))))))))).)))))............................................. (-22.52 = -22.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:38 2006