| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,478,507 – 3,478,602 |
| Length | 95 |
| Max. P | 0.651269 |
| Location | 3,478,507 – 3,478,602 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 74.08 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -10.36 |
| Energy contribution | -11.44 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3478507 95 - 23771897 UCGGAUAAUUUUCCUUAACGUCGCUUACUCCAUUGAUUGUAGGCCCAACAACUUCACAACCAAUUCUUUAAGUGCACAGGAUCUGGCACUUUAAC ..(((......)))........((((((..........)))))).........................((((((.(((...))))))))).... ( -17.60) >DroSec_CAF1 9075 95 - 1 UCGGAUAAUUGUCCUUAACGGGGCUUACUCCAUUAAUUGUAGGCCCAACAACUUCACAACCAAUUCUUGAAGUGCACAGGAUCUGGCACUUUAAC ..((((....))))......((((((((..........))))))))....................(((((((((.(((...)))))))))))). ( -28.90) >DroSim_CAF1 9063 85 - 1 UUGGAUAAUUGUCCU----------UACUCCAUUAAUUGUAGGCCCAACAACUUCACGACCAAUUCUUGAAGUGCACAGGAUCUGGCACUUUAAC ((((....(((..((----------(((..........)))))..)))(........).))))...(((((((((.(((...)))))))))))). ( -17.90) >DroEre_CAF1 24785 89 - 1 UUGGAAAUUUUUCUUCAAACGGCUUUACCCCAUUCAUGGUAGGCCCAA-AACCUCACAACUAAUUCUCGCAGUGCACAGGUACUGGCACU----- (((((........)))))..(((((.(((........))))))))...-.....................(((((.(((...))))))))----- ( -17.30) >DroYak_CAF1 9215 84 - 1 UUGGAAAUUUGACUUUAAAAGGAUUAAACCCAUGUAC----------A-AACUGCACAACUAAUUCUUGAAGUGCACAGGUACUGGCACUUUAGC ..................((((((((......((((.----------.-...))))....))))))))(((((((.(((...))))))))))... ( -15.30) >consensus UUGGAUAAUUGUCCUUAAAGGGGCUUACUCCAUUAAUUGUAGGCCCAACAACUUCACAACCAAUUCUUGAAGUGCACAGGAUCUGGCACUUUAAC ..((((....))))....................................................(((((((((.(((...)))))))))))). (-10.36 = -11.44 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:37 2006