Locus 1225

Sequence ID 3L_DroMel_CAF1
Location 3,470,942 – 3,471,038
Length 96
Max. P 0.975129
window1926

overview

Window 6

Location 3,470,942 – 3,471,038
Length 96
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 75.05
Mean single sequence MFE -22.09
Consensus MFE -12.00
Energy contribution -11.24
Covariance contribution -0.76
Combinations/Pair 1.41
Mean z-score -2.22
Structure conservation index 0.54
SVM decision value 1.74
SVM RNA-class probability 0.975129
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3470942 96 - 23771897
UUCUUGUUUGCUUGCACUUGGCAAAAGUGCAACGUUGCCAUUUAGGAAACUAUGGACCUUUUUCAUAAAAACAAACUU-AAAAGGA----CUUCAAACUAA----
.....(((((.((((((((.....)))))))).....(((..(((....)))))).((((((................-)))))).----...)))))...---- ( -21.99)
>DroSec_CAF1 1797 101 - 1
UCCUUGUUUGCUUGCACUUGGCAAAAGUGCAACGUUGUCAUUUAGCAAACUGAGGUACUUUUUCAUAAAAACAAACUUCAAAAGGAAAAAUUUCAAACUAA----
(((((((((((((((((((.....)))))))............)))))))((((((...((((....))))...)))))).)))))...............---- ( -23.90)
>DroSim_CAF1 1926 101 - 1
UCCUUGUUUGCUUGCACUUGGCAAAAGUGCAACGUUGUCAUUUAGCAAACUGAGGUACUCUUUCAUAAAAACAAACUUCAAAAGGACAAAUUUCAAACUAA----
(((((((((((((((((((.....)))))))............)))))))((((((..................)))))).)))))...............---- ( -23.07)
>DroEre_CAF1 17357 105 - 1
UCCUUGUUUGCCUGCACUUCACAAAACUGCAAUCUUGUCAUUUAGGAAAUUGGGCAACUUUUUCUUAAAAGUCUGCUUCGAAAGCACAAAAGUCGAGCACAGCAG
....(((......)))..........((((...((((.(.(((((((((..((....)).)))))))))....((((.....)))).....).))))....)))) ( -20.10)
>DroYak_CAF1 1668 104 - 1
CACUUGUUUGUCUGCACUUAACACAAAUGCAAUGUUGUCAUUUAAGAAAUUAGGCAACUUUUUAUUCAAAAA-UUCUCCAAAAAGAUAAAAGUCAGGCGAAGAAG
..(((.((((((((.((((..............((((((...(((....)))))))))..............-.(((......)))...)))))))))))).))) ( -21.40)
>consensus
UCCUUGUUUGCUUGCACUUGGCAAAAGUGCAACGUUGUCAUUUAGGAAACUGAGGAACUUUUUCAUAAAAACAAACUUCAAAAGGACAAAAUUCAAACUAA____
.....(((((..(((((((.....))))))).........(((((....))))).......................................)))))....... (-12.00 = -11.24 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:34 2006