| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,466,332 – 3,466,427 |
| Length | 95 |
| Max. P | 0.620340 |
| Location | 3,466,332 – 3,466,427 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.76 |
| Mean single sequence MFE | -14.26 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.40 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3466332 95 + 23771897 AAACAUUUAAUAAAUUAUUGAAAAACUGGCCGCUGGCAAA-AACCUAACAUA-----------AAAGCAGGGAAAUGUGGAAACACGAAAAUGGUUUUAAUGACCGA- .....(((((((...)))))))......(((...)))...-..(((..(...-----------...)..)))...((((....))))....(((((.....))))).- ( -14.90) >DroSec_CAF1 13494 96 + 1 AAACAUUUAAUAAAAUAUUGAAAAACAGGCCGCUGGCAAA-AACCAAACACA-----------AAAGCAGGGAAAUGUGGAAACACGAAAAUGGUUUUAAUGACCAAA .....(((((((...))))))).......(((((......-...........-----------..))).))....((((....))))....(((((.....))))).. ( -14.81) >DroSim_CAF1 13617 96 + 1 AAACAUUUAAUAAAUUAUUGAAAAACAGGCCGCUGGCAAA-AACCAAACACA-----------AAAGCAGGGAAAUGUGGAAACACGAAAAUGGUUUUAAUGACCAAA .....(((((((...))))))).......(((((......-...........-----------..))).))....((((....))))....(((((.....))))).. ( -14.81) >DroYak_CAF1 14064 107 + 1 AAGCAUUUAAUAAAUUAUUGAACAACAGGCCGCUAGCAAAAAACCUAACAUAAAUGUGGGAUAAAAACAGAAAAAAGUGAAAACACGAAAAAGGCUUUAAUGACCAA- ..............(((((((......((((............((((.((....))))))................(((....)))......)))))))))))....- ( -12.50) >consensus AAACAUUUAAUAAAUUAUUGAAAAACAGGCCGCUGGCAAA_AACCAAACACA___________AAAGCAGGGAAAUGUGGAAACACGAAAAUGGUUUUAAUGACCAA_ .....(((((((...)))))))......((.....)).......................................(((....)))......((((.....))))... (-10.15 = -10.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:30 2006