Locus 1221

Sequence ID 3L_DroMel_CAF1
Location 3,464,509 – 3,464,601
Length 92
Max. P 0.999355
window1921

overview

Window 1

Location 3,464,509 – 3,464,601
Length 92
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 73.31
Mean single sequence MFE -20.52
Consensus MFE -15.79
Energy contribution -16.48
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -2.42
Structure conservation index 0.77
SVM decision value 3.54
SVM RNA-class probability 0.999355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3464509 92 - 23771897
CUUCGAUUCUCCAGCAGGCCUUUCUAUUCAUGAAUGUCCUGCAGUCGAAAA--AAAACUCGACUUAAAAUAAUGAA--------AAUUAAAAAAAAGAUGUA------------------
.............(((((.(.(((.......))).).)))))((((((...--.....)))))).....((((...--------.)))).............------------------ ( -18.20)
>DroSec_CAF1 11744 99 - 1
CUUCGACUCUCCAGCAGGCCGUUAUAUUCAUGAAUGUCCUGCAGUCGAAAAAAAAAACUCGACUUAAAAUAUUUAA--------CAUUAAAAAA-AAAUCUA---------UUAG---CU
.(((((((.....(((((.((((.........)))).))))))))))))...........................--------..........-.......---------....---.. ( -16.70)
>DroSim_CAF1 11862 96 - 1
CUUCGACUCUCCAGCAGGCCGUUCUAUUCAUGAAUGUCCUGCAGUCGAAA---AAAACUCGACUUCAAAUAAUGAA--------AAUUAAAAAA-UUAUGUA---------UUAA---CU
.(((((((.....(((((.(((((.......))))).)))))))))))).---................((((...--------.)))).....-.......---------....---.. ( -22.20)
>DroYak_CAF1 12269 116 - 1
CUUCGACUCUCCAGCCGCCCUUCCUAUUCAUGGAUGUCCUGCAGUCGAAG----AAACUUGACUUCAAAUAAUGAGCCUAGGCACAUGGAGGAAAAUUUCCACUUAAGUAAUUAACACUU
((((((((.....((.(..(.(((.......))).)..).))))))))))----..((((((.........(((.((....)).)))(((((....)))))..))))))........... ( -25.00)
>consensus
CUUCGACUCUCCAGCAGGCCGUUCUAUUCAUGAAUGUCCUGCAGUCGAAA___AAAACUCGACUUAAAAUAAUGAA________AAUUAAAAAA_AUAUCUA_________UUAA___CU
.(((((((.....(((((.(((((.......))))).))))))))))))....................................................................... (-15.79 = -16.48 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:29 2006