Locus 122

Sequence ID 3L_DroMel_CAF1
Location 401,263 – 401,357
Length 94
Max. P 0.881794
window173

overview

Window 3

Location 401,263 – 401,357
Length 94
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.86
Mean single sequence MFE -16.92
Consensus MFE -11.86
Energy contribution -11.95
Covariance contribution 0.09
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.70
SVM decision value 0.92
SVM RNA-class probability 0.881794
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 401263 94 + 23771897
CCCUCUGUUUAUUUGCCC--------CAGACAC----CGAAUUCCCAUCCCCCGUUCAAGUCGUAUGAUUUAUGAUUGCCAAUAAAUCGAGCUGCUUGUUCUUUUC-
...((((...........--------))))...----................(..(((((.((.((((((((........)))))))).)).)))))..).....- ( -15.30)
>DroSec_CAF1 48229 93 + 1
CCCUCUGUUUAUUUUCCC--------CAGACUC----CG-AUUCCCAUCCCCCGUUCAAGUCGUAUGAUUUAUGGUUCCCAAUAAAUCGAGCUGCUUGUUCUUUUC-
...((((...........--------))))...----..-.............(..(((((.((.((((((((((...)).)))))))).)).)))))..).....- ( -15.40)
>DroSim_CAF1 50387 93 + 1
CCCUCUGUUUAUUUUCCC--------CAGACUC----GG-AUUCCCAUCCCCCGUUCAAGUCGUAUGAUUUAUGGUUCCCAAUAAAUCGAGCUGCUUGUUCUUUUC-
...((((...........--------))))...----((-((....))))...(..(((((.((.((((((((((...)).)))))))).)).)))))..).....- ( -17.80)
>DroEre_CAF1 51423 92 + 1
CCCUCUGUUUAUUCUCCC--------CAGACUC----CG-AUUCCCAUCC-CCGUUCAAGUCGUAUGAUUUAUGGUUCCCAAUAAAUCGAGCUGCUUGUUCCUUUC-
...((((...........--------))))...----..-..........-..(..(((((.((.((((((((((...)).)))))))).)).)))))..).....- ( -15.00)
>DroYak_CAF1 52520 104 + 1
-CCUCUGCUGAUUUUCCCCAGUUCCCCAGACUCCGUCCG-AUUCCCAUCCCCCGUUCAAGUCGUAUGAUUUAUGGUUCCCAAUAAAUCGAGCUGCUUGUUCUUUUC-
-..(((((((........))).....)))).........-.............(..(((((.((.((((((((((...)).)))))))).)).)))))..).....- ( -17.10)
>DroAna_CAF1 42721 102 + 1
CCUACU-UGCAUUUACUCUGGUUUUUGCGAUUCCGU-GA-AUUCUCACCCC-C-UUUCUGUCUUUUGAUUUAUUAGGUUUAAUAAAUCGGGCUGCAAGUUCCUUCCC
...(((-((((........((..((..((....)).-.)-)..))......-.-.....((((...(((((((((....))))))))))))))))))))........ ( -20.90)
>consensus
CCCUCUGUUUAUUUUCCC________CAGACUC____CG_AUUCCCAUCCCCCGUUCAAGUCGUAUGAUUUAUGGUUCCCAAUAAAUCGAGCUGCUUGUUCUUUUC_
.....................................................(..(((((.((.((((((((........)))))))).)).)))))..)...... (-11.86 = -11.95 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:02 2006