Locus 1219

Sequence ID 3L_DroMel_CAF1
Location 3,463,777 – 3,463,881
Length 104
Max. P 0.999832
window1917

overview

Window 7

Location 3,463,777 – 3,463,881
Length 104
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 71.30
Mean single sequence MFE -18.90
Consensus MFE -13.85
Energy contribution -15.47
Covariance contribution 1.62
Combinations/Pair 1.08
Mean z-score -2.58
Structure conservation index 0.73
SVM decision value 4.20
SVM RNA-class probability 0.999832
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3463777 104 - 23771897
AUU--------AAAUACUU--UUAUAUUUCCCUUGU-UUUUCAUUUAAGCAAUUUAUGUUCUUA----AAGCCAAAUAGU-UAAAUGAAACCACUGUGCAUUAUCGUUAAGCGCACAGAA
...--------........--...............-.((((((((((.(.((((..(((....----.))).)))).))-)))))))))...((((((.(((....)))..)))))).. ( -16.30)
>DroSec_CAF1 10973 84 - 1
AU----------------------------CCUUGUUUUUUCAUUUAAGCAAUUUA----CUUA----AAGUCAAAUAGUUUAAAUGAAACCACUGUGCAUUAUCGUUAAGCGCACAGAA
..----------------------------........((((((((((((.(((((----(...----..)).)))).))))))))))))...((((((.(((....)))..)))))).. ( -22.10)
>DroSim_CAF1 11064 84 - 1
AU----------------------------CCUUGUUUUUUCAUUUAAGCAAUUUA----CUUA----AAGUCAAAUAGUUUAAAUGAAACCACUGUGCAUUAUCGUUAAGCGCACAGAA
..----------------------------........((((((((((((.(((((----(...----..)).)))).))))))))))))...((((((.(((....)))..)))))).. ( -22.10)
>DroYak_CAF1 11360 113 - 1
AUCCAAUACCGUACUAGUUCAUGAUAUUUG-CUUUAUUUUCCUUUUAAGCAACUUA----CUUAUCCCAAUUAAAAUAGUUAGCAU--AACCACUGUGCAUUAUCGUUUGGCGCACAGAA
..........(..((((...((((((.(((-(((............))))))....----......................((((--(.....)))))..))))))))))..)...... ( -15.10)
>consensus
AU____________________________CCUUGUUUUUUCAUUUAAGCAAUUUA____CUUA____AAGUCAAAUAGUUUAAAUGAAACCACUGUGCAUUAUCGUUAAGCGCACAGAA
......................................((((((((((((.((((..................)))).))))))))))))...((((((.(((....)))..)))))).. (-13.85 = -15.47 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:26 2006