Locus 1216

Sequence ID 3L_DroMel_CAF1
Location 3,462,504 – 3,462,599
Length 95
Max. P 0.990589
window1912

overview

Window 2

Location 3,462,504 – 3,462,599
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 68.59
Mean single sequence MFE -20.69
Consensus MFE -13.12
Energy contribution -13.25
Covariance contribution 0.12
Combinations/Pair 1.20
Mean z-score -1.88
Structure conservation index 0.63
SVM decision value 2.22
SVM RNA-class probability 0.990589
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3462504 95 + 23771897
AAGUUAACGGCUAACCAGAUUUGGCAAAUUUCAAUUUGGA-CCAGAAAAUUUGCUCUACAACAAAUUGAGUUUGCUUGCAUGCA------------------------AAAAAGUUGGCU
.(((((((.(((((......)))))....(((((((((..-..(((........)))....)))))))))(((((......)))------------------------))...))))))) ( -23.00)
>DroSec_CAF1 9784 76 + 1
AAGUAAACUGUUAACGAGAUUUGGCAAAUUUCAAUUUGGC-CCAGAAAUUUUGC-------------------GCUUGCAUGCA------------------------AAAAAGUUGGCU
.........((((((....((((((((((....)))))..-)))))..((((((-------------------(......))))------------------------)))..)))))). ( -15.30)
>DroSim_CAF1 9838 76 + 1
AAGUUAACUGCUAACGAGAUUUGGCAAAUUUCAAUUUGAC-CCAGAAAUUUUGC-------------------GUUUGCAUGCA------------------------AAAAAGUUGGCU
.........((((((....((((((((((....)))))..-)))))..((((((-------------------((....)))))------------------------)))..)))))). ( -19.00)
>DroYak_CAF1 10075 119 + 1
AAGUUUACGGCUAACGAGAUUUGGGAAAUUUCAAUUUGCCCCCAAAAAGUUUGCGCU-CAACAAAUUGAGUUCGCUUGCAUGCAUGAAAAAAAAAAAGAAUAAAAACAAAACCGUUGGCU
........((((((((...((((((...............))))))..((..(((((-(((....)))))..)))..)).................................)))))))) ( -25.46)
>consensus
AAGUUAACGGCUAACGAGAUUUGGCAAAUUUCAAUUUGGC_CCAGAAAUUUUGC___________________GCUUGCAUGCA________________________AAAAAGUUGGCU
.........((((((........((((((((...((((....))))))))))))...................((......))..............................)))))). (-13.12 = -13.25 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:21 2006