Locus 1213

Sequence ID 3L_DroMel_CAF1
Location 3,461,542 – 3,461,640
Length 98
Max. P 0.822763
window1907

overview

Window 7

Location 3,461,542 – 3,461,640
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 96.60
Mean single sequence MFE -26.00
Consensus MFE -24.68
Energy contribution -24.57
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.95
SVM decision value 0.69
SVM RNA-class probability 0.822763
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3461542 98 + 23771897
AAAUUGGCAUUUGGGGGGCGGAGCCGAUUGUUAUUAUUGUUGAUGCCACUGCAUUGCUGCUUUAUCUGCGACUUUCCUUAUUUUCUGCUCCCCACUUU
...........((((((((((((..((..(((.........(((((....)))))...((.......)))))..))......)))))))))))).... ( -27.10)
>DroSec_CAF1 8871 98 + 1
AAACUGGCAUUUGGGGGGCGGGGCCGAUUGUUAUUAUUGUUGAUGCCACUGCACUGCUGCUUUAUCUUCAACUUUCCUUAUUUUCUGCUCCCCACUUU
...........(((((((((((((((((.((....)).))))..)))...(((....)))........................)))))))))).... ( -25.40)
>DroSim_CAF1 8892 98 + 1
AAAUUGGCAUUUGGGGGGCGGGGCCGAUUGUUAUUAUUGUUGAUGCCACUGCAUUGCUGCUUUAUCUUCAACUUUCCUUAUUUUCUGCUCCCCACUUU
...........(((((((((((((((((.((....)).))))..)))...(((....)))........................)))))))))).... ( -25.50)
>consensus
AAAUUGGCAUUUGGGGGGCGGGGCCGAUUGUUAUUAUUGUUGAUGCCACUGCAUUGCUGCUUUAUCUUCAACUUUCCUUAUUUUCUGCUCCCCACUUU
...........((((((((((((..(((....)))...(((((.......(((....))).......)))))..........)))))))))))).... (-24.68 = -24.57 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:17 2006