Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,458,497 – 3,458,591 |
Length | 94 |
Max. P | 0.507251 |
Location | 3,458,497 – 3,458,591 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -29.68 |
Consensus MFE | -15.94 |
Energy contribution | -17.86 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.54 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3458497 94 - 23771897 ACGUAA-----CAACAAAUGGGGCUAAAAAGGUGGUACAAAGGAGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUACUUUUAUGUAUU ((((((-----(((((....(((((((....(((((.........)))))....)))))))...))))).(((......)))........))))))... ( -25.20) >DroPse_CAF1 15458 90 - 1 ACGUAAUGCCCCAACUAUGGGGGUUAGAAA---------AGGGUGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGCAGCCACUUCUACAUACA ..(((...(((((....)))))..((((..---------..(((((((((((((.....))))))).(((.((.....)))))))))))))))..))). ( -30.00) >DroSec_CAF1 6219 94 - 1 ACGUAA-----CAACAAAUGGGGCUAAAAAGGUGGUCCAAAGGGGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUAAUUUUAUGUAUU ((((((-----(((((....(((((((....(((((((.....)))))))....)))))))...))))).(((......)))........))))))... ( -31.60) >DroSim_CAF1 6256 94 - 1 ACGUAA-----CAACAAAUGGGGCUAAAAAGGUGGUCCAAAGGGGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUACUUUUAUGUAUU ((((((-----(((((....(((((((....(((((((.....)))))))....)))))))...))))).(((......)))........))))))... ( -31.60) >DroPer_CAF1 18291 90 - 1 ACGUAAUGCCCCAACUAUGGGGGUUAGAAA---------AGGGUGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGCAGCCACUUCUACAUACA ..(((...(((((....)))))..((((..---------..(((((((((((((.....))))))).(((.((.....)))))))))))))))..))). ( -30.00) >consensus ACGUAA_____CAACAAAUGGGGCUAAAAAGGUGGU_CAAAGGGGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUACUUUUAUGUAUU .(((.......(((((....(((((((....(((((.........)))))....)))))))...)))))......)))..................... (-15.94 = -17.86 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:14 2006