Locus 1210

Sequence ID 3L_DroMel_CAF1
Location 3,456,530 – 3,456,631
Length 101
Max. P 0.521152
window1903

overview

Window 3

Location 3,456,530 – 3,456,631
Length 101
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.07
Mean single sequence MFE -25.82
Consensus MFE -17.95
Energy contribution -19.32
Covariance contribution 1.37
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.521152
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3456530 101 - 23771897
ACAGAGGCGGGAGUAUCCUGAAGAUUAGGGUGAUUCGAAAAAUAAAAUU-----GUACUGAGAUUUAUUUCGAGGUACAUCCCCAGAAACUUGAAAAAAAAACUUU--------------
.....((.(((((((((((((...))))))).))))............(-----(((((..((......))..)))))).))))......................-------------- ( -21.10)
>DroSec_CAF1 4289 116 - 1
ACAGAGGCGGGAGUAUCCUGCAGAUUAGGGUGAUUCGAAAAAUAUUUUCGGUGAGUACUGAGAGUUAUUUCGAGGCACAGCCCCAGAAC----AAAAUAAAACUUUACAUUCUCACAUUA
...((((((((.....)))))......((((..(((((((...(((((((((....)))))))))..))))))).....))))......----..................)))...... ( -32.00)
>DroSim_CAF1 4287 120 - 1
ACAGAGGCGGGAGUAUCCUGUAGAUUAGGGUGAUUCGAAAAAUAUUUUCGGUAAGUACUGAGAGUUAUUUCCAGGCACAGCCCCAGAAACUUAACAAAAAAACUUUACAUUCUCACAUUA
...((((((((.....)))))......((((..((.((((...(((((((((....)))))))))..)))).)).....))))............................)))...... ( -24.40)
>DroYak_CAF1 4344 100 - 1
ACAGAGGCGGGAGUAUCCUGUAAGUUAGGGUGACUCCAAAAAUAUUUUCGGUUACUUCUGUGAUUUAUUUCGAGGCUCAUCCCCAGGGACUUAAAAAAAA--------------------
...(((.(.(((((((((((.....)))))).)))))............((((((....))))))........).))).(((....)))...........-------------------- ( -25.80)
>consensus
ACAGAGGCGGGAGUAUCCUGUAGAUUAGGGUGAUUCGAAAAAUAUUUUCGGU_AGUACUGAGAGUUAUUUCGAGGCACAGCCCCAGAAACUUAAAAAAAAAACUUU______________
........(((..(((((((.....))))))).(((((((...((((((((......))))))))..))))))).......))).................................... (-17.95 = -19.32 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:13 2006