Locus 1209

Sequence ID 3L_DroMel_CAF1
Location 3,455,918 – 3,456,026
Length 108
Max. P 0.761425
window1902

overview

Window 2

Location 3,455,918 – 3,456,026
Length 108
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 95.70
Mean single sequence MFE -30.02
Consensus MFE -28.55
Energy contribution -28.55
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.95
SVM decision value 0.50
SVM RNA-class probability 0.761425
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3455918 108 + 23771897
ACUACUCUUAAGCAAGGAUAAAAAUCCGUGAGUAUCCUGCUCGCCAAA-AAAGGGUUUUUAGUUGAUUUCAGCAGCAGCAACUCGUCGGAUUCGUUGCGCGUUCGAAGC
...........((((.((.....((((((((((...(((((.(((...-....))).....((((....)))))))))..))))).))))))).))))........... ( -29.50)
>DroSec_CAF1 3629 108 + 1
ACUACUCUUAAGCAAGGAUAAAAAUCCGUGAGUAUCCUGCUCGCCAAA-AAAGGAUUUUUAGUUGAUUUCAGCAGCAGCAACUCGUCGGAUUCGUUGCGCGUUUGAAGC
...........((((.((.....((((((((((...(((((..((...-...)).......((((....)))))))))..))))).))))))).))))........... ( -29.00)
>DroSim_CAF1 3604 108 + 1
ACUACUCUUAAGCAAGGAUAAAAAUCCGUGAGUAUCCUGCUCGCCAAA-AAAGGAUUUUUAGUUGAUUUCAGCAGCAGCAACUCGUCGGAUUCGUUGCGCGUUUGAAUC
...........((((.((.....((((((((((...(((((..((...-...)).......((((....)))))))))..))))).))))))).))))........... ( -29.00)
>DroYak_CAF1 3605 109 + 1
ACUAAGCGCAAGCAAGGAUAAAAAUCCGUGAGUAUCCUGCUCGCCAAAAAAAGGAUUUUUAGUUGAUUUCAGCAGCAGCAACUCGUCGGAUUCGUUGCGCGUUCAAAGC
....(((((..((((.((.....((((((((((...(((((..((.......)).......((((....)))))))))..))))).))))))).)))))))))...... ( -32.60)
>consensus
ACUACUCUUAAGCAAGGAUAAAAAUCCGUGAGUAUCCUGCUCGCCAAA_AAAGGAUUUUUAGUUGAUUUCAGCAGCAGCAACUCGUCGGAUUCGUUGCGCGUUCGAAGC
...........((((.((.....((((((((((...(((((..((.......)).......((((....)))))))))..))))).))))))).))))........... (-28.55 = -28.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:12 2006