Locus 1208

Sequence ID 3L_DroMel_CAF1
Location 3,439,066 – 3,439,158
Length 92
Max. P 0.500000
window1901

overview

Window 1

Location 3,439,066 – 3,439,158
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 97.10
Mean single sequence MFE -17.17
Consensus MFE -17.19
Energy contribution -17.30
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.30
Structure conservation index 1.00
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3439066 92 - 23771897
CAGCAACCCACACUUGCUAAGGUUUCCCACAGUCUCAUCAUCAUCUCCAUGCGGCCAUGUGGCCAUGCAGCCAUCAUUAUCAUAAUCAUUAU
.(((((.......)))))..((((.(((((((((.(((..........))).)))..)))))....).)))).................... ( -14.10)
>DroSec_CAF1 54299 92 - 1
CAGCAGCCCACAUUUGCUAAGGUUUCCCACAGUCUCAUCAUCAUCUCGAUGCGGCCAUGUGGCCAUGCAGCCAUCAUUAUCAUAAUUAUUAU
..(((..((((((.......((....))...(((.((((........)))).))).))))))...)))........................ ( -18.70)
>DroSim_CAF1 43572 92 - 1
CAGCAGCCCACAUUUGCUAAGGUUUCCCACAGUCUCAUCAUCAUCUCGAUGCGGCCAUGUGGCCAUGCAGCCAUCAUUAUCAUAAUUAUUAU
..(((..((((((.......((....))...(((.((((........)))).))).))))))...)))........................ ( -18.70)
>consensus
CAGCAGCCCACAUUUGCUAAGGUUUCCCACAGUCUCAUCAUCAUCUCGAUGCGGCCAUGUGGCCAUGCAGCCAUCAUUAUCAUAAUUAUUAU
.(((((.......)))))..((((.(((((((((.((((........)))).)))..)))))....).)))).................... (-17.19 = -17.30 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:11 2006