Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,434,545 – 3,434,644 |
Length | 99 |
Max. P | 0.999370 |
Location | 3,434,545 – 3,434,644 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.31 |
Mean single sequence MFE | -22.63 |
Consensus MFE | -19.50 |
Energy contribution | -19.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -2.92 |
Structure conservation index | 0.86 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3434545 99 + 23771897 UCUGGGUCCGGUCUUUUCUUUGGGGUCGCAUUCAAACAACCCCUUGCAACCCUACGCCUCCUCCAUCUACAAUACAUCGAGCCAUUCAUGAAUGGACCC ...(((((((.((.......((((((.(((..............))).)))))).(.(((..................))).)......)).))))))) ( -23.81) >DroSec_CAF1 49869 97 + 1 UCUGGGUCCGGUCUUUUCUUUGGGGUCGCAUUCAAACAACCCCUUCCAACCCUACUCCUCCUCAUCCUCC--UCCAUCGAACCAUUCAUGAAUGGACCC ...(((((((.((........(((((.(........).)))))...........................--......((.....))..)).))))))) ( -20.00) >DroSim_CAF1 39031 97 + 1 UCUGGGUCCGGUCUUUUCUUUGGGGUCGCAUUCAAACAACCCCUUCCAACCCUACUCCUCCUCAUCCUCC--UCCAUCGAACCAUUCAUGAAUGGACCC ...(((((((.((........(((((.(........).)))))...........................--......((.....))..)).))))))) ( -20.00) >DroYak_CAF1 49200 78 + 1 UCUGGGUCCGGUCUUUUCUUCGGGGUCGCAUCU----UACCCCUUCGAACCCUG---------------C--UCCAUCGAGCUAUUCAUGAAUGGACCC ...(((((((.((........(((((.......----.)))))...(((....(---------------(--((....))))..)))..)).))))))) ( -26.70) >consensus UCUGGGUCCGGUCUUUUCUUUGGGGUCGCAUUCAAACAACCCCUUCCAACCCUACUCCUCCUCAUCCUCC__UCCAUCGAACCAUUCAUGAAUGGACCC ...(((((((.((........(((((.(........).)))))...................................(((...)))..)).))))))) (-19.50 = -19.50 + 0.00)
Location | 3,434,545 – 3,434,644 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.31 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -28.75 |
Energy contribution | -29.75 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.29 |
Structure conservation index | 0.83 |
SVM decision value | 3.55 |
SVM RNA-class probability | 0.999370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3434545 99 - 23771897 GGGUCCAUUCAUGAAUGGCUCGAUGUAUUGUAGAUGGAGGAGGCGUAGGGUUGCAAGGGGUUGUUUGAAUGCGACCCCAAAGAAAAGACCGGACCCAGA ((((((........(((.(((..(.((((...)))).).))).)))..((((.(..((((((((......))))))))...)....))))))))))... ( -36.60) >DroSec_CAF1 49869 97 - 1 GGGUCCAUUCAUGAAUGGUUCGAUGGA--GGAGGAUGAGGAGGAGUAGGGUUGGAAGGGGUUGUUUGAAUGCGACCCCAAAGAAAAGACCGGACCCAGA ((((((((((.....(.((((......--...)))).)....))))..((((....((((((((......))))))))........))))))))))... ( -34.40) >DroSim_CAF1 39031 97 - 1 GGGUCCAUUCAUGAAUGGUUCGAUGGA--GGAGGAUGAGGAGGAGUAGGGUUGGAAGGGGUUGUUUGAAUGCGACCCCAAAGAAAAGACCGGACCCAGA ((((((((((.....(.((((......--...)))).)....))))..((((....((((((((......))))))))........))))))))))... ( -34.40) >DroYak_CAF1 49200 78 - 1 GGGUCCAUUCAUGAAUAGCUCGAUGGA--G---------------CAGGGUUCGAAGGGGUA----AGAUGCGACCCCGAAGAAAAGACCGGACCCAGA ((((((...........((((....))--)---------------).((.(((...(((((.----.......)))))...)))....))))))))... ( -33.40) >consensus GGGUCCAUUCAUGAAUGGCUCGAUGGA__GGAGGAUGAGGAGGAGUAGGGUUGGAAGGGGUUGUUUGAAUGCGACCCCAAAGAAAAGACCGGACCCAGA ((((((.(((((((.....)).))))).....................((((....((((((((......))))))))........))))))))))... (-28.75 = -29.75 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:08 2006